Genomic Location: Scaffold_9690__1_contigs__length_17297:7266...9017
NR annotation: MYA29584.1, NADH dehydrogenase (quinone) subunit D [Nitrospira sp. SB0666_bin_27]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN34331-RA |
| Transcript |
| ANN34331-RA |
| Protein |
| ANN34331-RA |
| UniProt accession | Description |
|---|---|
| O67335 | NADH-quinone oxidoreductase subunit C/D 2 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=nuoC2 PE=1 SV=1 |
| Q74GA5 | NADH-quinone oxidoreductase subunit D OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=nuoD PE=3 SV=1 |
| A5G9B6 | NADH-quinone oxidoreductase subunit D OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=nuoD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002316 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00346 all species → | Complex1_49kDa | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | Family | Interproscan |
| PF00329 all species → | Complex1_30kDa | Respiratory-chain NADH dehydrogenase, 30 Kd subunit | Family | Interproscan |
| PF00374 all species → | NiFeSe_Hases | Nickel-dependent hydrogenase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026662 all species → | Family | NADH-quinone oxidoreductase subunit CD | Interproscan |
| IPR001135 all species → | Domain | NADH-quinone oxidoreductase, subunit D | Interproscan |
| IPR029014 all species → | Homologous_superfamily | [NiFe]-hydrogenase, large subunit | Interproscan |
| IPR001268 all species → | Domain | NADH:ubiquinone oxidoreductase, 30kDa subunit | Interproscan |
| IPR037232 all species → | Homologous_superfamily | NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily | Interproscan |
| IPR001501 all species → | Family | Nickel-dependent hydrogenase, large subunit | Interproscan |
| IPR022885 all species → | Family | NAD(P)H-quinone oxidoreductase subunit D/H | Interproscan |
| IPR010218 all species → | Family | NADH dehydrogenase, subunit C | Interproscan |
| IPR020396 all species → | Conserved_site | NADH:ubiquinone oxidoreductase, 30kDa subunit, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11993 all species → | NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0030964 all species → | Cellular Component | NADH dehydrogenase complex | Interproscan |
| GO:0050136 all species → | Molecular Function | NADH:ubiquinone reductase (non-electrogenic) activity | Interproscan |
| GO:0016651 all species → | Molecular Function | oxidoreductase activity, acting on NAD(P)H | Interproscan |
| GO:0048038 all species → | Molecular Function | quinone binding | Interproscan |
| GO:0051287 all species → | Molecular Function | NAD binding | Interproscan |
| GO:0008137 all species → | Molecular Function | NADH dehydrogenase (ubiquinone) activity | Interproscan |
| GO:0016151 all species → | Molecular Function | nickel cation binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K13378 | nuoCD; NADH-quinone oxidoreductase subunit C/D | EC:7.1.1.2 | Oxidative phosphorylation | ko00190 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
