Gene detail

Detailed information of ANN34356-RA in Leptoseris scabra

Genomic Location: Scaffold_18__1_contigs__length_3402158:361670...391891
NR annotation: KAJ7390156.1, hypothetical protein OS493_026663 [Desmophyllum pertusum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34356-RA

ATGGCAACAAAGTTTAGTTTGACGGCATTAAATGGCTCTAGATATGCCAAAGACATTTACAACTATGCCAGAAAAGCTGTTGATCCACAAGTCAGTTTGACTCGTTATGAAGTACCAAGAGCTGGGTTGTGCCTCTTTGCAAAACATGCTGCTCAGTTCAAGGAATACGTTGCTAAAGACTATGAGGATCTGTATGAAGCATTTTATCGCTGGTGCAAACATCATAACCGAGAGACGAGCTATGCTGGATATTTAGCCATGGATGCTTTTCTGAAGCAGATAGCAGAACATTTTGTTTCAAGAAGTGCTGATAAATCAGAAATGGTTATGTTTAAGTATTTTATCAAGAAATTCCGATCAATTATTGATTCCGCCTCCAGTGATACAAAACAAACATCAGTTGCAATACGAGGCTATGGCTACTTCTCAAAGCCCTGCAAATTGTTTATGCAAGCTGAAGATGTGAAGTTCATGTTTAGTGAGATGATGCAGAGGAGCGAGCAGATTTACCTCAGACAAGATGAACTGGTAGAAGACAAAGTCCAGCATCTTCCAAGCTTTCTTGAGGCATTGTCATGTATTGTTCAGGAGCTGGATGAGATTTCTGACTCTGTTCTTGCCTCTTTGGAGAAGTTAGTAGTGGTGTTATTCAACAATTTCACAAGGTTGGCCAAAGGGTCTAAGTTCCTCTGTTGTAAAGCCCTCATCAAAGTGCTGTTTAACCTTTCTGACAAAGGTTCAGTTCTCAGGAGATTTCTTTCTGAAGTAGTTTACCAGGGCCTCATTAGAACTTGTTCTCTTCCAGTTGCGTTAGATGAGGTAAATGAAATGACCGTAACCGGGGATGGTGAGGCAATGGATACTTCATCACCCAAAACATCATTTAAAGATTACTTGGAGCTTTGGGAATTCCTCTTAGAGAAGGGAAAGTTTAAGGATGTCAGCTTAGTTGGACAAAAACTTGAACAGCGTGAAAGCATGCATGGGATGGTGTATGATGAGATGATGAAGGCTATTTTACATATCATCCACAAGCTGGACTTATCTTCCATCAAGGGATCAGCTACAGGATTAGAGGGAGATGTTTTTCTGGAAGCTGCCCCATCGTCACCAGCACTGTCAGAACAAGTGGCTTTGTCTGATCCAGTTGCAGGACTGCAGCCCAAAGTGCCCAAAGACTTCCTCATTTTCATTAATCTTATTGAGTTTTGCAAGTGTGTCCTTCCAACGCATTGTATAGCAATGTTTGAGAATTGGGTGTATGTGTTTGGTAGAGAGATAATTGTCATGTCTACAAGGTTTCCAGTCGTCAGTGGGTTTTACAAATTACTGGAAGTTTGCATGAAAATCTGTAATAAGCTGTGTTTTTTTAAGCACATCAAGGCAGAGAAACCAGAAGATACCAGTGAAGATTTAGATATGGAAATAGTTGACACATCTGATCGCATGACATGCTTTGTGCTCTTTCGCAAATTTATTAAAGAGGTGCTGATTAGGATGCAGCAGTATAAAGATGACTTGCTAGCGTCTTGTCTGAGGCTTGTTCTTTCTCTTCCCCTTGAAATAGTGAAGCTTGATGTGGTTTCCTTTGTGCCAGCTGTAAAGCTTACATTTAAACTTGGTTTGAGTTACACTCCTTTGGCTCAAGCTGGCCTGGATGCCTTACAGAGTTGGTCGGCTGCTCTCCCTTCTGAAAAGTTGAATCCTTACCTAATTGAAATCCTTCCTTGTCTGGATGGCTACCTCAAATCTTCTGCTGAATCAAATGAAGAGGATCAGTTGTCTGAAGGGTCTAAGACCATTGTACTAAGCACGGCATCCCGCCATGGATCACAAGGGAGGAAAATTCCTCATAGATTGTTGAAAGTCAACAAACAGTCCCCACAACAGAGCACCCTTACTCCATTGGCCACTGTTCGCCATCAGATTCTTAGACTGCTGGGGAGTTTAGGAGGCCAGACAAACATCCTGCTTCTTGGGAGCAGAGAGATTGATCCCTCAAGGGCTGTGGCTTGGGACACTGAAAACCATCTAGGTTTTGCTGTTCCTTTTCAAGACATGAAGCCTGAAATTGATTTAGATCCATTTTTACCCCGTGTAGTCGAACTTGCAACAACATCAAGTGACCGACAAACAAAGGTTGCTGCTTGTGAGGCTCTTCACTCTCTTGTTCTCTACATGCTTGGCAAAAGTGTCACACAGCCTCAGGGAAAGAAAAGTCCAATGGAGAAATTGTGGAAGCATGTGTTTCCTTGCCTTCTTCAGCTGGCGTGTGATGTTGAACAGGTAGCGGAACAGTTATTCAAGCCATTAGTTTTCCAGTTGATCCACTGGTTCACCAACAACAGAAAGTATGAAAGTCCTGAAACAATGGCTCTGCTAGATGCAATTCTGGATGGCATTGTTCACCATGCTGACACTGCTTTGCGAGATTTCAGTGCCCAGTGTGTACGGGAATTCCTACAGTGGTCAATAAAACAGACAAGCGAAAAGCAATTAGAGAAGAGTCCAATCAATATCAAGTCTCTGTTAAAGCGTCTCTACAGCCTGGCTCTCCACCCAAGTACAGCAAAAAGGCTTGGTGCTGCTTTGGCCTTTAACAACATCTACACGATTTTCAGGCAAGACGTTTTAAGGCAACCTTGTACTGTAAAAATAGGTCTCAACGTAATCAAAGAAGACATAGTCAAACATGGGGAGGAGTCTTCTTTGGTTGATATTTTCGTGTTGGAAATTCTTGCAAACTACTTGGAAAGTTTGTCTCTTGCTCACAATGATGACCAGGCAAGAGAGATGTTTGTACTAGACAGGCATCTAACGGGATTTGGAACATTGAGTAGCATAACACTGATTCATGTGATTCCCTGGCTTATGAAACAGTGTGGGAAACCTAGCACTGAATGTCGACATCAGTGTATGAAACTTTTTTGCCAGTTGGCGCCACTTGTACCAGGTGTAAACTCTGCTGCTGATTGGATGAAGAAAACCTATGACGATCATCAGTCACTGTTTGTTCACAGCTTTGAAGGTGGAGGCGGAGGGCAAAAGGGTATTGAGCAGTATCCTACCCTATCAGATATTGGTGGACCATTTTCCTTGAAAGAGACATTTGTTTGGTTTGACTTCTTGTTGGCAGCTCTCGATTGCTACACTTGGAGTTTTGGTGAACGCCTGCTTTCACCAAGTCAAGTTTTTATCACTGCAAAAGGTGGTAAAAAATCCAGTGTTCTGTTCAAATCTTTGAGCTTTTTTGTGACCAAAATGGCCATGTTTGGCATCACCGCTGCCAGGGATTGCTTTACCGTAGGAGTGTCCAGTGACAAAGTGGAGATATTTACACCAAACGAGATCGACAGCTATAACAGGGCAAAATGCACAGTGATAGTTAGGATCATGAACTTTGTAACAGTGCTACTTCAAGTCTCCACTCAAGAAACTTTGAAGACTGTTCCTGCTGATTTTTGGAGTGATGGCCTATTCAATGTGGTACTTAGTTGTGTGTTGGAACCAGGACTCGTTGGTTTCAACATGGGAGATGTTGAAGTCATTGAAAAGCTTCCAGAACAGACTGGTGCATTGTGTAAGATGCTGGCACAGAAACTTCCTGGACCACTTGGTGAGAGGTTTAAAGAGAGCATTACAAAGAAAATTGCACTAGGAAGCTATCTTCACACATAG

Transcript

ANN34356-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P78527	DNA-dependent protein kinase catalytic subunit OS=Homo sapiens OX=9606 GN=PRKDC PE=1 SV=3
Q9DEI1	DNA-dependent protein kinase catalytic subunit OS=Xenopus laevis OX=8355 GN=prkdc PE=2 SV=1
Q8QGX4	DNA-dependent protein kinase catalytic subunit OS=Gallus gallus OX=9031 GN=PRKDC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001506 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20500 all species →	DNA-PKcs_N	DNA-PKcs, N-terminal	Repeat	Interproscan
PF20502 all species →	DNAPKcs_CC1-2	DNA-dependent protein kinase catalytic subunit, CC1/2	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050517 all species →	Family	DNA Damage Response and Repair Kinase	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR046804 all species →	Domain	DNA-PKcs, N-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR046803 all species →	Domain	DNA-dependent protein kinase catalytic subunit, CC1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11139 all species →	ATAXIA TELANGIECTASIA MUTATED ATM -RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000723 all species →	Biological Process	telomere maintenance	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN34356-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.