Genomic Location: Scaffold_6208__1_contigs__length_27549:12213...14606
NR annotation: WP_216692003.1, DNA mismatch repair protein MutS [Francisella salimarina]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN34641-RA |
| Transcript |
| ANN34641-RA |
| Protein |
| ANN34641-RA |
| UniProt accession | Description |
|---|---|
| B0TX99 | DNA mismatch repair protein MutS OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / CCUG 19701 / FSC 153 / O#319-036) OX=484022 GN=mutS PE=3 SV=1 |
| A0Q809 | DNA mismatch repair protein MutS OS=Francisella tularensis subsp. novicida (strain U112) OX=401614 GN=mutS PE=3 SV=1 |
| B2SEQ6 | DNA mismatch repair protein MutS OS=Francisella tularensis subsp. mediasiatica (strain FSC147) OX=441952 GN=mutS PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003274 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05190 all species → | MutS_IV | MutS family domain IV | Domain | Interproscan |
| PF00488 all species → | MutS_V | MutS domain V | Domain | Interproscan |
| PF05192 all species → | MutS_III | MutS domain III | Domain | Interproscan |
| PF01624 all species → | MutS_I | MutS domain I | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000432 all species → | Domain | DNA mismatch repair protein MutS, C-terminal | Interproscan |
| IPR007861 all species → | Domain | DNA mismatch repair protein MutS, clamp | Interproscan |
| IPR007696 all species → | Domain | DNA mismatch repair protein MutS, core | Interproscan |
| IPR007695 all species → | Domain | DNA mismatch repair protein MutS-like, N-terminal | Interproscan |
| IPR036187 all species → | Homologous_superfamily | DNA mismatch repair protein MutS, core domain superfamily | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR045076 all species → | Family | DNA mismatch repair MutS family | Interproscan |
| IPR016151 all species → | Homologous_superfamily | DNA mismatch repair protein MutS, N-terminal | Interproscan |
| IPR017261 all species → | Family | DNA mismatch repair protein MutS/MSH | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11361 all species → | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006298 all species → | Biological Process | mismatch repair | Interproscan |
| GO:0030983 all species → | Molecular Function | mismatched DNA binding | Interproscan |
| GO:0003690 all species → | Molecular Function | double-stranded DNA binding | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0140664 all species → | Molecular Function | ATP-dependent DNA damage sensor activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K03555 | mutS; DNA mismatch repair protein MutS | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
