Gene detail

Detailed information of ANN34643-RA in Montipora grisea

Genomic Location: Scaffold_6208__1_contigs__length_27549:22645...25185
NR annotation: WP_246145961.1, glycoside hydrolase family 18 protein [Francisella marina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN34643-RA

ATGATAAAAAAAACGTTTATAACAAGCTTACTTATAGCATCATCAGCTATAGCTTTCGCTAGTACTTCTACTCCTGCAGCTGCTAGTTCCGCAAACTCTAATGATAGAGTAATGGCTGGGTATTTAGATATTACCGCTATGGGATCTGCTGATAGTGTAGATTTATCTCAAGTTGCTAAAGATGGTTACAACGAGGCTGTTATAGCATTTGCAACAATAGATGCAAATAATAATATATCGTTTAAAAGTGACTATGAAGCTCTTGCAGCTAAAAAAATCCAAGAAGCAAAAGATGCCGGATTAAAAGTTGTAGTATCAGTTGGTGGACAAAGTAATGTTAATACTTATAACCCCAATGGTTCTGATGCTAAAGGACTTGCTCAAAATATAGTTAACTTCCTAAATAAATATGGATTAGATGGTATCGATTTTGATATTGAAATACCAGAAACAGCAACAAACAATGGTACATACCTAAAAGATGTAATTACAAATATAAAAGATATCGATAGTTCAAAGTTAGTAGTAATAGCTCCTCAGATTAATAATGATAAACTAGTCTCAACCGGTAATGATGAATTTTATGCTCCATTATTTAATGCCACCAATAAAGTCTTAAACTTAATTGATTATATATATGTACAGAACTACAACACTGCACCTGAGCAAAATCCTGATTTTATTCAAGATGCATACACACTTACTAAAGATTATATTGGAGCGAAAACAGCTAAAATAGTTATAGGCTATCCTACAGCTGCTCAGGGTGGCGGAGCTGCTACAGTATACTTCCCTCATTTTGATGGTGGTAAAACTCCTCCAGACTCTTCGGCCTTACAAACTTATGATGCTATGAAGTCAGTATATGATAATCTAGGAAACATTCCTAAAGATACTAAATTCGCTGGTTTTATGGGTTGGTCTTTAAATGTTGATTATGACCCAGAAGCATACAACATGGGTTCGATCAAATATCCGGCTCACGGCATAGGAGACTTTGGTTACTACATGTCTCCTTGTGCTTTAGATAGTAACAAATGTGATAAGATTCCTAATGAAAGAGAACTTCCTAAAGAAGCAACCGTTTTAGTACATAATAACAGCCCAGCGACAGGTTTTGATGGCATAACTTTCTCAGGTCCTGAAGGTACCGTATATACACAAGGCTATATAGCTCCAACTACTGATAAGAGACCGGGTACTGCTTCTGCTAAAGCTCCTATTGGAACAAGTATAACTGTATCACCAAAAATAACATGGTATGAAGAGTCAGACATACCCGAAATAATGGAGCTAACATGGATTATCAGTACAACTACTGCTAAAGGCTTATTGAATCGTGCTCATGCATACAAAGCATTGGTAGACCAAAATATTCAAGAAGAAAATGCTGATCCTGATAAAGGCATAACTATGGGGCTGTTTAACTACCCTGTACTTATGGCTGCAGATATTATGATGTTTGATGCAGATTTAGTTCCAGTAGGAAAAGATCAAATCCAACATATAGAAATAGCCCGTGATATTGCAAATAGATTTAACCATATATACAAAAAACAAATATTAAAAGCACCTCAAGCTCTAACGAATGAAGACAGTCAAACAATACTTGGTTTAGATGGTCGCAAAATGTCAAAGAGTTATGATAATACCATACCTATATTCTCCACAGAGAAAAAGCTTAGAAAACAGGTTATGAAAATCATCACAAACTCCCAAACACCTGAAGAAAGAAAGGATCCAAAAAACTGTACTGTCTTTGCAGTATATAAAAGTATCGCTAACACAGCTGAAGTCTCCTCTCTAGAAGAAAAATATTTAGCTGGTGGATTAGGTTGGGGAGATGCCAAACAAATACTCTTTGAAAAAATAAATGAATATTTGACAGACGCTAGAGAGAAATATGATTACTATATCAATAACTCAAAAGTTGTAGATGATATTCTCAATCAAGGCGCAGAGAAAATGCGTCCTTTAGCTATGAGTAAACTTAGAGAAATTAAAGATTTAATAGGAATGTAA

Transcript

ANN34643-RA

Protein

Uniprot

Uniprot term	Description
Q88NA1	Tryptophan--tRNA ligase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=trpS PE=3 SV=1
Q87WW4	Tryptophan--tRNA ligase OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=trpS PE=3 SV=1
Q9HVX6	Tryptophan--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=trpS PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00704	Glyco_hydro_18	Glycosyl hydrolases family 18	Domain	Interproscan
PF00579	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011583	Domain	Chitinase II	Interproscan
IPR002306	Family	Tryptophan-tRNA ligase	Interproscan
IPR001579	Active_site	Glycosyl hydrolases family 18 (GH18) active site	Interproscan
IPR050203	Family	Tryptophan--tRNA ligase	Interproscan
IPR017853	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR014729	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR001223	Domain	Glycoside hydrolase family 18, catalytic domain	Interproscan
IPR002305	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43766	TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0004830	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006436	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0004812	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0006418	Biological Process	tRNA aminoacylation for protein translation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K02027	ABC.MS.S; multiple sugar transport system substrate-binding protein	-	Transporters	ko02000	deepkoala