Gene detail

Detailed information of ANN34654-RA in Montipora grisea

Genomic Location: Scaffold_2600__1_contigs__length_41513:33788...36094
NR annotation: MXW97505.1, aconitate hydratase [Acidimicrobiaceae bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34654-RA

ATGACAGTGAGCGCCAGCACCCCTATCGAATTGATCACCAGCGTGTACGAGACGCTGGATGAAAGGGTCAAAGCGGCCCGCAAGCGGCTGGGCCGGCCGCTAACTATGGCTGAAAAAATCCTGGTCAACCACCTTGACAGGCCCGACCAGCCCCTTGAGAGAGGCAAATCCTACGTCGATACGCGGCCAGACCGCGTGGCTTTGCAGGACGCTACCGCCCAGATGGCCTGGCTCCAGTTCATGACCGCCGGCCTCGGCGAGGTTCAGGTTCCGACCACCACCCACTGCGATCACCTTATCTTGGCCCGCGTCGACGGCAAGCGGGACCTCACCGCCGCTCTAGACAGCAACGAAGAGGTCTACGACTTCCTCGCGAGCGTGTGCGCCCGCTACGGGGCGGGGTTCTGGAAACCGGGCAGCGGCATCATCCACCAGGTCGTCCTGGAGAACTACGCCTTCCCTGGCGGCATGATGATCGGCGCGGACAGCCACACACCCAACGCTGGGGGCCTAGCTATGCTCGCTGTGGGCGTAGGCGGCGCGGACGCCGTGGACGTGATGACGGGCTTCGCGTGGAACACTCGCTGGCCCCGGCTGATCGGCGTCCGCCTCAGAGGGGAACTGAATGGCTGGGCGGCCCCCAAAGACATCATCTTGAAAGTGGCGGAGATTCTCACGGTCTCCGGCGGAACCGGCGCGATAATCGAGTACTTCGGCAGCGGCGCCGAGAGCCTCAGCGCCACCGGCAAGGCCACGATCTGCAATATGGGCGCTGAGATCGGCGCAACCTCCTCGCTGTTCGCGTACGACGATGCGATAGCCCGCTATCTCGAGAGCACCGGGCGAGAGCAAGTAGCCAGTGCAGCAAGCGCGGTCGCTCATCACTTGCGCAGCGATAGCGAGGCGGTCGCGAGCCCGCAACACTTTTATGACCGGGTTATAGAGATCGACCTTGATACGCTCACACCTCACATCAACGGCCCGCACACCCCGGACCTGGCCAGGGAAGTATCTGATCTTGGCGCCGAGGCGCGCGAGCACAGATGGCCGGTTGCGATCAGCGCCGCTCTGATCGGCAGCTGCACCAATTCCTCCTACGAGGACATCACCCGCGCGGCTTCCATCGCACGTGACGCGGCCGCCAAGGGGCTGCGAGCCCGCACCAAGTTGCTGGTCACTCCCGGGTCCGAGCAGGTGCGCGCCACCATCGAGCGCGACGGGCTAATGGCCGACTTCGAGGCTCTAGGCGCCACCGTGCTAGCTAACGCCTGCGGTCCCTGCATAGGGCAGTGGGACCGTTCCGGCGAGCCGGGTCACCGCAGCGGCCAGACTAACGTTATAGTCACCTCCTACAACCGCAACTTCCCTAAACGCAACGACGGCGACGCGGCCACGCTGGCCTTCGTGACTTCGCCGGAGGTCGTGGTGGCCCTAGCGATCGCCGGTTCTATCGATTTTGACCCGGTCAACGGCGCGCTCAGGGGCCCTTGCGGTTCACCGGTGCGCCTAGCGACTCCTGCTGGCGTGGAGCTCCCGCCGGCGGGATTCGAGGCAGGTTCTAGCTCGTTCGTAGCGCCGCCGCCGGCCGGTTCAGCTGAGGCGGCGGCAGTCGAAGTGCGGGTCTCGCCAGCGTCGGAGAGGCTCCAGCTTCTCGAACCTTTCGCCGCTTGGGACGGTAACGACTTCGAGGATCTGCTGGTGATCGCCAAAGCGAAAGGCAAGTGCACCACCGATCACATCTCGATGGCCGGGCCGTGGCTCAAATACCGGGGCCATCTCGAGAACATCTCGGGCAACCTGTATCTGGGCGTCGTGAACGCATTCGATGGTTACGAAACGGGTCATGGCCGCAACCAGCTCACAGGACGGGCGGAGCCGCTTCCGGATATAGCGCGCGCTTACCATGAAGCCGGCCGGCGCTGGGTTTTTATCGGTGACCGCAACACCGGCGAGGGCTCAAGCCGCGAGCACGCTGCTATGGAGCCCCGGTTCCGGGGCTGCGCCGCTGTGCTAGCGCGCAGCTTTGCTCGTATCCATGAAGCCAATCTGAAAAAGCAAGGCGTCCTGGCTTTAACCTTCGCTGATCCGGCGGATTACGACCGCATAGGCGAGAACGACCGGATTGCTGTGCGGGGACTTGATGGCCTGGCGCCGGATCGCTCGGTCGCCGTTGAGGTATCCCCCCCGGCGCCAAAGGGCGCTAGCTGGAGCTTCGAGGCTCACCACACTCTCAGCGACGAACAGATCGAATGGTTCCGGGCGGGAAGCGCTTTAAACATCATCCGCCGCAAGCGCCAGCGCCGCTAA

Transcript

ANN34654-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54XS2	Probable aconitate hydratase, mitochondrial OS=Dictyostelium discoideum OX=44689 GN=aco2 PE=3 SV=1
P34455	Probable aconitate hydratase, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=aco-2 PE=3 SV=2
P49609	Aconitate hydratase, mitochondrial OS=Gracilaria gracilis OX=2777 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004434 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00330 all species →	Aconitase	Aconitase family (aconitate hydratase)	Family	Interproscan
PF00694 all species →	Aconitase_C	Aconitase C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015928 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase, swivel	Interproscan
IPR001030 all species →	Domain	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain	Interproscan
IPR006248 all species →	Family	Aconitase, mitochondrial-like	Interproscan
IPR015932 all species →	Homologous_superfamily	Aconitase, domain 2	Interproscan
IPR018136 all species →	Binding_site	Aconitase family, 4Fe-4S cluster binding site	Interproscan
IPR036008 all species →	Homologous_superfamily	Aconitase, iron-sulfur domain	Interproscan
IPR015931 all species →	Homologous_superfamily	Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3	Interproscan
IPR050926 all species →	Family	Aconitase/IPM Isomerase	Interproscan
IPR000573 all species →	Domain	Aconitase A/isopropylmalate dehydratase small subunit, swivel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43160 all species →	ACONITATE HYDRATASE B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003994 all species →	Molecular Function	aconitate hydratase activity	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN34654-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.