Genomic Location: Scaffold_3123__1_contigs__length_38101:1726...3781
NR annotation: MCB9752474.1, F0F1 ATP synthase subunit beta [Myxococcales bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN34686-RA |
| Transcript |
| ANN34686-RA |
| Protein |
| ANN34686-RA |
| UniProt accession | Description |
|---|---|
| A9F3R4 | ATP synthase subunit beta OS=Sorangium cellulosum (strain So ce56) OX=448385 GN=atpD PE=3 SV=1 |
| C6E9F1 | ATP synthase subunit beta OS=Geobacter sp. (strain M21) OX=443144 GN=atpD PE=3 SV=1 |
| Q39Q56 | ATP synthase subunit beta OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=atpD PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003890 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02823 all species → | ATP-synt_DE_N | ATP synthase, Delta/Epsilon chain, beta-sandwich domain | Domain | Interproscan |
| PF02874 all species → | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain | Domain | Interproscan |
| PF00006 all species → | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR020546 all species → | Domain | ATP synthase, F1 complex, delta/epsilon subunit, N-terminal | Interproscan |
| IPR036771 all species → | Homologous_superfamily | F0F1 ATP synthase delta/epsilon subunit, N-terminal | Interproscan |
| IPR020003 all species → | Active_site | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR001469 all species → | Family | ATP synthase, F1 complex, delta/epsilon subunit | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR005722 all species → | Family | ATP synthase, F1 complex, beta subunit | Interproscan |
| IPR024034 all species → | Homologous_superfamily | ATPase, F1/V1 complex, beta/alpha subunit, C-terminal | Interproscan |
| IPR036121 all species → | Homologous_superfamily | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily | Interproscan |
| IPR004100 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain | Interproscan |
| IPR000194 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Interproscan |
| IPR050053 all species → | Family | ATPase alpha/beta chains | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15184 all species → | ATP SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
| GO:0046034 all species → | Biological Process | ATP metabolic process | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02112 | ATPF1B, atpD; F-type H+/Na+-transporting ATPase subunit beta | EC:7.1.2.2 EC:7.2.2.1 | Photosynthesis proteins | ko00194 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
