Detailed information of ANN34712-RA in Montipora grisea

Genomic Location: Scaffold_8696__1_contigs__length_21852:19974...21832
NR annotation: RKU17554.1, tRNA 2-thiouridine(34) synthase MnmA [Candidatus Poribacteria bacterium]
Species Montipora grisea · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q39TZ3tRNA dimethylallyltransferase OS=Geobacter metallireducens (strain ATCC 53774 / DSM 7210 / GS-15) OX=269799 GN=miaA PE=3 SV=1
A3DDI1tRNA dimethylallyltransferase OS=Acetivibrio thermocellus (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) OX=203119 GN=miaA PE=3 SV=1
A5GEV6tRNA dimethylallyltransferase 2 OS=Geotalea uraniireducens (strain Rf4) OX=351605 GN=miaA2 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006450 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20259
all species →		tRNA_Me_trans_MtRNA methyl transferase PRC-barrel domainDomainInterproscan
PF20258
all species →		tRNA_Me_trans_CAminomethyltransferase beta-barrel domainDomainInterproscan
PF03054
all species →		tRNA_Me_transtRNA methyl transferase HUP domainDomainInterproscan
PF01715
all species →		IPPTIPP transferaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018022
all species →		FamilyIPP transferaseInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR023382
all species →		Homologous_superfamilytRNA-specific 2-thiouridylase MnmA-like, central domain superfamilyInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR046884
all species →		DomaintRNA-specific 2-thiouridylase MnmA-like, central domainInterproscan
IPR046885
all species →		DomaintRNA-specific 2-thiouridylase MnmA-like, C-terminal domainInterproscan
IPR004506
all species →		FamilytRNA-specific 2-thiouridylaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11933
all species →		TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0052381
all species →		Molecular FunctiontRNA dimethylallyltransferase activityInterproscan
GO:0016783
all species →		Molecular Functionsulfurtransferase activityInterproscan
GO:0002143
all species →		Biological ProcesstRNA wobble position uridine thiolationInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN34712-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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