Gene detail

Detailed information of ANN34761-RA in Leptoseris scabra

Genomic Location: Scaffold_22__1_contigs__length_1720886:1593434...1609112
NR annotation: CAH3159785.1, unnamed protein product [Porites lobata]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10881	Lupus La protein homolog OS=Bos taurus OX=9913 GN=SSB PE=2 SV=2
P05455	Lupus La protein OS=Homo sapiens OX=9606 GN=SSB PE=1 SV=2
P38656	Lupus La protein homolog OS=Rattus norvegicus OX=10116 GN=Ssb PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002938 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05383 all species →	La	La domain	Domain	Interproscan
PF08777 all species →	RRM_3	RNA binding motif	Domain	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR006630 all species →	Domain	La-type HTH domain	Interproscan
IPR014886 all species →	Domain	La protein, xRRM domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045180 all species →	Family	La domain containing protein	Interproscan
IPR002344 all species →	Family	Lupus La protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22792 all species →	LUPUS LA PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11090	LA, SSB; lupus La protein	-	Systemic lupus erythematosus	ko05322	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.