Genomic Location: Scaffold_1558__1_contigs__length_53416:17448...19572
NR annotation: MCQ3930563.1, NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit [Chloroflexota bacterium]
Species Montipora grisea · all data for this species · gene families
| CDS |
| ANN34843-RA |
| Transcript |
| ANN34843-RA |
| Protein |
| ANN34843-RA |
| UniProt accession | Description |
|---|---|
| P22520 | Colicin V secretion/processing ATP-binding protein CvaB OS=Escherichia coli OX=562 GN=cvaB PE=3 SV=1 |
| P59852 | Lactococcin-G-processing and transport ATP-binding protein LagD OS=Lactococcus lactis subsp. lactis OX=1360 GN=lagD PE=1 SV=1 |
| Q9RCG7 | Exotoxin translocation ATP-binding protein PaxB OS=Pasteurella aerogenes OX=749 GN=paxB PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0045312 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00005 all species → | ABC_tran | ABC transporter | Domain | Interproscan |
| PF03412 all species → | Peptidase_C39 | Peptidase C39 family | Family | Interproscan |
| PF00664 all species → | ABC_membrane | ABC transporter transmembrane region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR003439 all species → | Domain | ABC transporter-like, ATP-binding domain | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR005074 all species → | Domain | Peptidase C39, bacteriocin processing | Interproscan |
| IPR011527 all species → | Domain | ABC transporter type 1, transmembrane domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR039421 all species → | Family | Type 1 protein exporter | Interproscan |
| IPR017871 all species → | Conserved_site | ABC transporter-like, conserved site | Interproscan |
| IPR036640 all species → | Homologous_superfamily | ABC transporter type 1, transmembrane domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24221 all species → | ATP-BINDING CASSETTE SUB-FAMILY B | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008233 all species → | Molecular Function | peptidase activity | Interproscan |
| GO:0016020 all species → | Cellular Component | membrane | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0140359 all species → | Molecular Function | ABC-type transporter activity | Interproscan |
| GO:0034040 all species → | Molecular Function | ATPase-coupled lipid transmembrane transporter activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K06147 | ABCB-BAC; ATP-binding cassette, subfamily B, bacterial | - | Transporters | ko02000 | deepkoala |
Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
