Gene detail

Detailed information of ANN34923-RA in Montipora grisea

Genomic Location: Scaffold_2920__1_contigs__length_39202:12782...15169
NR annotation: MCK5284869.1, DEAD/DEAH box helicase [Alphaproteobacteria bacterium]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN34923-RA

ATGAATAGCTTTGAAAGCTTTGGTCTCTCACAGACGCTGAACGCGTCTCTGGCGAGAATTAATTATAAAACCCCAACCTCTATTCAAGCCCAAGCGATACCACTCGCCCTTAGAGGTCGAGATATTCTGGGTAGTGCGCAAACAGGAACCGGTAAGACAGCGGCATTTAGTATTCCGCTTGTTGAATCACTTCTGCGCTCTCCTCATGGCTGCGCTCTTATTTTAACGCCGACACGTGAGCTCGCTAAACAGGTTTTAGGCGTGATCCATGATTTGCTTGGCCGTAACAGCGACATCAACACAGCCTTTATTATTGGTGGTGAGGCGTATGGTAAACAAATGTCACAATTGCGCGCTAACCCTCGCGTTATTGTCGGCACACCGGGGCGGATCAATGACCATTTGGAGCGCGGCTCCATCAAACTGGATAAGACGAGTTTTCTGGTTCTTGATGAAACAGACCGCATGTTGGATATGGGTTTTGGTGTGCAACTCGATAAGATCATCAAATTTCTGCCTGAAAACCGTCAAACATTGATGTTTTCTGCGACATTGCCTAAAGGCATCATCGCGCTTTCAAGCAAATATATGAATAATCCGCACCGCATATCGGTTGGTGAAACCAATGTCATTGCGAGCAATATCAAGCAAGAAGCGATGCGCATCGAGCAGGCGGATAAATATCAAGAACTGGTCGTTCAGCTCCATGCGCGCCAAGGCTCAGTGATCGTGTTTGTTAAGACAAAGTACAATGCTGATAAAATGGCCAAAAAACTACGTCAGGAAGGTTTTACTTCAGAAGGTCTCCATGGCGATTTACGGCAAAATAAACGTGACAAGGTAATGAAGAATTTTCATTCCCAGAACTTCAGGGTTTTGATCGCGACTGATATTGCTGCGCGCGGCCTTGATGTCCCGCATATCGAACATGTAATCAATTATGATCTTCCGCAAGTCGCAGAAGATTACATTCACCGAATGGGCCGAACAGCACGCGCTGGTGCGAAGGGCTCAGCGCTGAGCTTTATTTCTGCGCAGGATGGTCGCAAATGGCATGCGATTGAAAAACTGCTAAACCCTGAAGCCGCCAATGATTACCAAGATGGACCAAAACGTAAAAATAAAGCGCGCCGCAAGCCTTATCGTGGACGCCCACAGCCTGATGAACAATCGTCCAAAAATCATGGCGAAAAGCGACGCAACAAACATTCTAAACGTCCTGACAAAAATGAAAGTAAGCGTAAAAATAATCGTAAGCACAATGACGGGCAGCAAGAGCATGATAGTCGCGGGGAAAGACCGGCTAAAAAGCACCAAAAAAACAGCAAGCATAATACGGCAGAGAAATTCGTTCAGCCCCGCAAGCCTGCAGACAAAAAGCATAAATCTCGAGGCAAAAAAACCAACGGAGTTGACTGGTCAGTCAAATGCGATATATCTGTTGCAGAGAAAGTTATGGCAGTGCAACAAGAAACGCAAAAAACACCGACAAAAGAACGGCTTATCGAAACCGCGATCGATTTGATCTGGAAATCGAGTTATGGCGCCGTCAGCGTGGACGGCATTTGTAAAGAAGCCGATGTTCGAAAAGGGAGCTTCTATCATTACTTTCCATCGAAGATAGATCTGGCTGTTGCGGCCATGGATTCCGCGTATTCCGAATTTAAATGCATGATGGAAGAAATGTTCGATAAATCCGTGCCGCCGGTCGAACGATTTGAACGCCTCATGGAGTATGGCTTGGCGCATCAGGAAGAAGTCGCTGAAAAATACGGACGTGTGTGCGGCTGTCCTTTCATCAGTCTGGCGAGTGAAATGGCACCACAAGACCCGCAAATCCGGGAAAAAGTGGAAGGCATTATCATGAGAAAGCGCAGTTTTTATGAGGGTGCACTTGAGGACATGATTACCGAAGGGCTGATACCCGAAGATACTGACGTCGAGGCGATGTCATACAAAATTTATACTTTTGTTATGGGACAGTTGATGCTCGCCCGTATACAAAATAGCTTGGAGCCGATGAAGCGCGATTTAAGAACAGGGTTATTCGCGCTTATTGGCATTGATTATTCCGCGTTGAAGCGATCTGCGTAA

Transcript

ANN34923-RA

Protein

Uniprot

Uniprot term	Description
P25888	ATP-dependent RNA helicase RhlE OS=Escherichia coli (strain K12) OX=83333 GN=rhlE PE=1 SV=3
Q65N62	DEAD-box ATP-dependent RNA helicase CshA OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=cshA PE=3 SV=1
Q5L3G9	DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00440	TetR_N	Bacterial regulatory proteins, tetR family	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001647	Domain	DNA-binding HTH domain, TetR-type	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR036271	Homologous_superfamily	Tetracyclin repressor-like, C-terminal domain superfamily	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan