Gene detail

Detailed information of ANN34963-RA in Leptoseris scabra

Genomic Location: Scaffold_40__1_contigs__length_121784:173...939
NR annotation: WP_029510898.1, ATP-binding cassette domain-containing protein [Marinobacterium stanieri]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P63390	Probable ATP-binding protein YheS OS=Escherichia coli O157:H7 OX=83334 GN=yheS PE=3 SV=1
A0A0H2VBH0	Probable ATP-binding protein YheS OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=yheS PE=1 SV=1
P63389	Probable ATP-binding protein YheS OS=Escherichia coli (strain K12) OX=83333 GN=yheS PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan
PF12848 all species →	ABC_tran_Xtn	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050611 all species →	Family	ATP-binding cassette sub-family F member, EF3 subfamily	Interproscan
IPR032781 all species →	Domain	ABC-transporter extension domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19211 all species →	ATP-BINDING TRANSPORT PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15738	uup; ABC transport system ATP-binding/permease protein	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.