Detailed information of ANN34972-RA in Leptoseris scabra

Genomic Location: Scaffold_40__1_contigs__length_121784:44383...45936
NR annotation: MBN1378530.1, Flp pilus assembly complex ATPase component TadA [Gammaproteobacteria bacterium]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1D098Type IV pilus assembly ATPase PilB OS=Myxococcus xanthus (strain DK1622) OX=246197 GN=pilB PE=1 SV=1
P31703Type II secretion system protein E OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=outE PE=3 SV=1
Q00512Type II secretion system protein E OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=xcpR PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0011321 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00437
all species →		T2SSEType II/IV secretion system proteinFamilyInterproscan
PF05157
all species →		MshENMshEN domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan
IPR037257
all species →		Homologous_superfamilyType II secretion system protein GspE, N-terminal superfamilyInterproscan
IPR001482
all species →		DomainType II/IV secretion system domainInterproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR007831
all species →		DomainType II secretion system protein GspE, N-terminalInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30258
all species →		TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0005886
all species →		Cellular Componentplasma membraneInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN34972-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP