Gene detail

Detailed information of ANN34978-RA in Leptoseris scabra

Genomic Location: Scaffold_40__1_contigs__length_121784:102144...105389
NR annotation: WP_250656749.1, glutamate synthase large subunit [Alkalimarinus coralli]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34978-RA

ATGAGAGCAGGTCTATATCAACCTGGTGAATTCAGGGATAACTGTGGCTTTGGCCTAATTGCCCATATGGATGGCGAAGCAAGTCATCATCTTTTGCAAACGGCCATTGAAGCCCTAACCTGTATGACACACCGTGGAGGCATTGCCGCCGACGGTAAAACCGGCGATGGTTGTGGCCTGCTGATTAAAAAGCCCGATGCTTTTTTGCGAAAGCAAGCCAGTAACTTATTCTCTCGGGAACTCAGTGATCAATATGGCGTGGGAATGTTATTCCTCAGCCAAGATGACACCAAAGCTCAGCAAGAGCGAGAGCAAGTGAACCAAATCCTTGCCGCCCAAGGGCTAACCTTGGTGGGTTGGCGTCAGGTGCCTGTAGACGACAAAGTCTGTGGCCCTATGGCATTAGAATGTCTGCCTAAGATCGAACAAGTCTTTGTTGAACCCAATGACGCAGACGCAAACTTTTCAGCAACCTTGTTTGTTGCCCGTCGCCACATTGAAATAGCCCTAGCCGAACACGAAGAATTCTATATCTGTAGTTTTTCAGACAAGGTTTTATCCTATAAAGGCCTTGTCATGCCTGTGGATTTACCGAAGTTTTATCTAGACCTCAGTGATTCGGGTCTGGCGACGGCTATTTGTGTTTTCCATCAGCGCTTTTCCACCAACACTGCCCCTCGTTGGCCTTTAGCTCAGCCCTTCAGATTGCTGGCCCATAACGGTGAAATTAACACCATTCAGGGTAACCGCAATTGGGCAAAAGCCAGAAGCTCGAAGTTTGAAACCGAGCAGTTACCCGATATTCAAAGCCTGCAGCCATTGGTGAATACCAGTGGTTCTGACTCCTCTAGCATGGATAACATGCTAGAAGTCATGCTCTTGGGGGGTATCGATTTATTCCGTGCGATTCGCATGATGATTCCACCGGCTTGGCAAAATATAGAAACCATGGACCCCAACTTACGTGCATTTTATGAATATAATTCAATGCACATGGAGCCATGGGATGGACCTGCCGGTGTTGTACTCACCGATGGCCGCCATGCAGTGTGTTTGCTCGATCGTAATGGTCTGCGTCCAGCTCGTTATGTGATTACCAAAAATGGCTATATCACGCTGTCCTCAGAAATTGGTGTCTATAGCTATAAGCCTGAAGATGTGGTTGAGAAGGGACGTGTTGGTCCAGGTCAAATCCTCGCCATTGATACCCACACAGGGCGTGTGCTTCATACGGATGATATTGATAACACCTTAGCGAAAGAACACCCCTACAAGCAGTGGCTAAAAAGCGAGGCGACGCGCTTAGAGAGTTCTTCAATTATCGAAGACGAAAGCCACGTCCATGAAAGCCTTTCAGAAGCTGACCTCAAAGTGCAAATGAAATTGCACCAAATCAGCTTTGAAGAGCGGGACCAAGTGATACGTCCACTGGCAGAAACAGGGCAAGAAAATACTGGATCAATGGGAGACGATACGCCCATGGCCGTGCTTTCTGGTCGCGTTCGTCAAGTTGCGGATTACTTTCGCCAACAGTTTGCTCAGGTAACCAATCCACCTATTGATCCTCTACGTGAGGCGGTGGTGATGTCTTTGGAAACCTGTTTAGGTGCTGAGAAAAATATCTTTGACCTCACACCTGATCATGCCAAACGGGTTATTTTAAGCTCGCCAGTGCTTTCGACGGATAAATTCCAACATATTCTCAGCCTAGAAGACGATGCTTTTCAGTCTGAGACAGTGTTGCTGAACTATGATCCTTTGTTAGGTCTCGAACAAGCTATCGTCCAAGTCGCCGATAAAGCCGAAGCGGCTGTGCGTGCAGGTAAAGCGATTGTCGTTTTATCTGATCGTAACCTTGATGCGCAGCAATTATTGATTCCTGCGGTCATGGCCACAGGCGCTGTGCATCACCGTTTGATTGAGAAGGGTTTACGTTGTCACGCCAATATTATTGTTGAGACAGGCGCTGCGAGAGACTCCCATCAGTTTGCGGTTCTCTATGGTTTTGGTGCAACCGCGGTTCATCCTCATCTGAGCTACGAGGTGATCGATGACTTGATTAACAGCGGCGAGTTGCTCTCTGATCACCATGAGGCCTATGCCAAATACCGTAACGGTATTAAAAAGGGTCTGTTAAAGATTCTGTCTAAAATGGGCATCTCAACCATCGCGTCTTATCGGGGTTCCCAGCTTTTTGAAGCCGTGGGTTTATCAAAAGAAATCGTCGATCTCTGTTTCACCGGCGTTTCTAGCCGTATTCAAGGCGCACGCTTCCGTGACTTCCAGGCCGAACACGAATTGTTAGCTCGTGATGCGCGCATACCACGCAAGTCCATTGCGACAGGCGGTCTGTTAAAATACGTCCATGACGGTGAGTACCACTGTTACAACCCAGATGTTGTGAGCTTCTTACAAGCGGCGGTGCAGAGCGGTGACTATGATCGCTATAAAAAATACGCTGCTTTAGTGAACGAGCGTCCTGTGGCACAGCTACGGGATTTGATGGGCTTTAAAGAAGATTTAAAAGCAATTCCGCTAGAAGATGTGGAGCCTATCGAAAATATTCTCAGTCGTTTTGATTCTGCGGCTATGTCGTTGGGAGCACTTTCTCCCGAGGCCCATGAAGCCTTGGCGGCGGCCATGAACCGTTTAGGAGGTCGCTCGAATTCTGGGGAAGGGGGTGAAGATCCTAACCGTTACGGCACGGAGAGAAACTCTAAAATTAAACAGGTGGCTTCAGGTCGTTTTGGGGTCACGCCGCATTACTTGAGTAACGCTGACGTACTGCAAATTAAAGTAGCCCAAGGTGCCAAGCCTGGTGAGGGCGGACAATTACCTGGTGGTAAAGTGAACCAGCTGATTGCGAAGTTGCGTTATTCCGTGCCGGGTGTGACGCTCATTTCGCCGCCGCCGCATCATGATATTTATTCCATCGAAGATTTGGCTCAGCTTATTTTCGATTTGAAACAAGTAAACCCTAGCGCGTTAGTGTCAGTAAAACTGGTGTCTGAACCCGGTGTAGGCACTATCGCCACGGGTGTTGCTAAAGCCTATGCCGATCTCATTACCGTTTCTGGTTACGACGGTGGTACGGCAGCTAGCCCTCTCACATCGATTCGTTATGCGGGCTCTCCTTGGGAATTAGGCTTGAGTGAAACTCACCAAGCCCTGCGTTGTAATGACTTACGTGACAAGGTGAGACTACAAACCGATGGTGGTTTTAAAAACAGGGTTAGATGTGGTTAA

Transcript

ANN34978-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1V8I1	Glutamate synthase [NADPH] large chain OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) OX=768066 GN=gltB PE=1 SV=1
P09831	Glutamate synthase [NADPH] large chain OS=Escherichia coli (strain K12) OX=83333 GN=gltB PE=1 SV=3
P39812	Glutamate synthase [NADPH] large chain OS=Bacillus subtilis (strain 168) OX=224308 GN=gltA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00310 all species →	GATase_2	Glutamine amidotransferases class-II	Domain	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF04898 all species →	Glu_syn_central	Glutamate synthase central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR050711 all species →	Family	Electron transfer and nitrogen metabolism enzyme	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR006982 all species →	Domain	Glutamate synthase, central-N	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11938 all species →	FAD NADPH DEHYDROGENASE/OXIDOREDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0019676 all species →	Biological Process	ammonia assimilation cycle	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN34978-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.