Gene detail

Detailed information of ANN34979-RA in Leptoseris scabra

Genomic Location: Scaffold_40__1_contigs__length_121784:105435...108109
NR annotation: KAH8256776.1, hypothetical protein KR044_003908 [Drosophila immigrans]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34979-RA

ATGGTGGCGTTGGGCTGTAAATATCTTCGTATTTGTCATCTGAACAACTGTGCCACAGGTGTTGCGACTCAGCAAGATCGTTTGCGTGAAGATCACTTCAAAGGCACGGTAGAAATGGTCATGAACTATTTCACCTTTATCGCCACCGAAGTGCGTGAATGGTTAGCGCGTATTGGTGTGAGCAGTTTGCAAGATCTGGTCGGTAGAACAGACCTGCTAAAAGTCTTGCCCGGTGTGACAGACAAGCAACAAAATCTCGACCTTAGCCCCATTCTCTATAATGATGCGGTGCCGGAAGAGAAACCTCACACCTGCCAAACGGCGCGTAACGCACCTTTTGATCGCGGTGTCTTAGCGGAGAAAATGGTCGAAGCTTGCCAAAGCGCCATCGAAAATAAAGCCGGTGGGGAATTTGAATTTACTGTCACCAACTGCGATCGCTCAATTGGTGCCAGACTTTCCGGTGAAATTGCCAAGCGCCATGGCAACCAAGGCATGAGCGATAAGCCTATTGTTCTTAATCTTAAGGGCACGGCGGGACAAAGCTTTGGGGTCTGGAATGCTGGCGGCCTGAATATGTATCTTGAAGGTGATGCCAACGATTATGTCGGTAAAGGCATGGCGGGCGGTCGTTTGGTGATAACGCCACCAAAAGGCAGTGAATTCAAAACCCAAGATACATCGATTATTGGTAACACCTGTCTCTACGGCGCTACCGGCGGGAAACTCTTCGCCGCAGGCCGTGCTGGTGAGCGTTTTGGTGTACGTAACTCCGGTGTGCATGCGGTTGTCGAGGGTGTTGGTGATCACTGTTGTGAATACATGACAGGCGGTATGGTGACTGTGTTGGGTAGCACAGGCTACAACTTCGGTGCTGGTATGACGGGTGGTTTTGCCTATGTCCTCGATTTAGAGCGCCACTTCGTTGATAAATACAATCATGAGCTGGTAGAGATCCATCGGATTACCACCGAAGACATGGAAGACTACCGTGCGCATCTAAAAGCCGTGATCAAAGAATACGTGCGTGAAACCGACAGCCAGTGGGGCGCCCATATTCTTGAGAATTTCCAAGAGTTCGTTGAATCCTTCTGGTTGGGGAGAGGTAAAACAATGGCTGAAAGACTGAACAACGACTTCCAGTTTCTCGATGTCGGTCGTAAAGATCCGAACAAGAAAGCGATTAATTTACGCAAAGCTGAGTTTGTCGAAATCTACAAGCCTTTTAAGGAAGAGCAAGCCTCTTCCCAAGCCCATCGCTGCTTAGCCTGCGGTAATCCTTATTGTGAATGGAAATGTCCCGTTCATAACTATATCCCGAATTGGTTAAAACTGGTTTCCGAAGGCAATATCATGGAAGCCGTAGAGTTGTGCCACCAAACCAACACCTTGCCCGAAGTGTGTGGCCGTGTGTGCCCTCAAGATCGGCTTTGTGAAGGTGCCTGTACCCTGAATGACGGTTTTGGGGCTGTGACTATTGGTTCTGTGGAAAAATACATTACCGATACCGCCTTTGCCATGGGTTGGCGTCCCGACATGTCTCATGTGATACCCACAGGTAAACGAGTCGCCATTATTGGTGCTGGGCCTGCGGGTCTAGGTTGTGCTGACATTCTTGCGCGTGCGGGTGTTGATGCCGTGGTTTTTGATAAGCAACCTGAAATTGGTGGCTTGCTGACCTTTGGTATTCCAGAGTTTAAATTGGAAAAAAGCGTGATTACCCAGCGCCGTGAAATTTTTGAAGGCATGGGTATTGAGTTTCGTTTAAATACTGAAGTTGGCAAAGATGTCACGATGGAATCTTTGGTCAATGAATTTGATGCGGTATTTCTTGGTATGGGGACTTACACCTACATGCGTGGTGGATTCCCCGGTGAAGACCTTGAAGGTGTTTATGATGCCTTACCCTTTTTGATTGCGAATGTAAAAAACAATCTCGGCATGGAAACGGAAACCATCAGCGTTGAAGGTCAACGTGTTGTGGTTCTTGGCGGTGGTGATACCGCGATGGACTGTAATCGCACCTCTGTACGCCAAGGTGCAACCTCTGTTGCCTGTGCTTACCGTCGAGACGAAGAAAACATGCCGGGTTCTCGTCGCGAAGTGGCCAACGCTCGCGAAGAAGGCGTTAACTTTATGTTCAATCGCCAGCCTGTTGAAATCGTTGGCGATGGCAAAGTTGAAGGTGTAAAAGTGATCCGTACCCAGTTGGGTGAGCCTGATGCTAACGGCCGTCGTCGTCCTGAAGAAGTCCCTGGCAGCGAAGAAATTCTACCGGCGGATGCTGTGTTAGTCGCTTTTGGTTTTCGTCCAAGTCCTGCGGATTGGTTTGTTGATATGGGTATCGAAACAGACGAAAGCGGACGTGTTATTGCGCCAGAGAATGGTCGCTATCATTTCCAAACCACCAATGAAAAAGTCTTTGCCGGTGGCGATATGGTGAGAGGCTCTGATTTGGTAGTGACAGCCATCGCCGAAGGCCGTAAAGCAGCTGAAGGCATCCTTGACTATTTAGAAGTGTAA

Transcript

ANN34979-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1V8I0	Glutamate synthase [NADPH] small chain OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) OX=768066 GN=gltD PE=1 SV=1
P09832	Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain K12) OX=83333 GN=gltD PE=1 SV=3
P37127	Putative oxidoreductase AegA OS=Escherichia coli (strain K12) OX=83333 GN=aegA PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002031 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992 all species →	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF01645 all species →	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF01493 all species →	GXGXG	GXGXG motif	Family	Interproscan
PF14691 all species →	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785 all species →	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR023753 all species →	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR002932 all species →	Domain	Glutamate synthase domain	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR002489 all species →	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR051394 all species →	Family	Glutamate Synthase	Interproscan
IPR006006 all species →	Family	Glutamate synthase NADPH small chain-like	Interproscan
IPR028261 all species →	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR036485 all species →	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100 all species →	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537 all species →	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930 all species →	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638 all species →	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539 all species →	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00266	gltD; glutamate synthase (NADPH) small chain	EC:1.4.1.13	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.