Gene detail

Detailed information of ANN34979-RA in Leptoseris scabra

Genomic Location: Scaffold_40__1_contigs__length_121784:105435...108109
NR annotation: KAH8256776.1, hypothetical protein KR044_003908 [Drosophila immigrans]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN34979-RA

ATGGTGGCGTTGGGCTGTAAATATCTTCGTATTTGTCATCTGAACAACTGTGCCACAGGTGTTGCGACTCAGCAAGATCGTTTGCGTGAAGATCACTTCAAAGGCACGGTAGAAATGGTCATGAACTATTTCACCTTTATCGCCACCGAAGTGCGTGAATGGTTAGCGCGTATTGGTGTGAGCAGTTTGCAAGATCTGGTCGGTAGAACAGACCTGCTAAAAGTCTTGCCCGGTGTGACAGACAAGCAACAAAATCTCGACCTTAGCCCCATTCTCTATAATGATGCGGTGCCGGAAGAGAAACCTCACACCTGCCAAACGGCGCGTAACGCACCTTTTGATCGCGGTGTCTTAGCGGAGAAAATGGTCGAAGCTTGCCAAAGCGCCATCGAAAATAAAGCCGGTGGGGAATTTGAATTTACTGTCACCAACTGCGATCGCTCAATTGGTGCCAGACTTTCCGGTGAAATTGCCAAGCGCCATGGCAACCAAGGCATGAGCGATAAGCCTATTGTTCTTAATCTTAAGGGCACGGCGGGACAAAGCTTTGGGGTCTGGAATGCTGGCGGCCTGAATATGTATCTTGAAGGTGATGCCAACGATTATGTCGGTAAAGGCATGGCGGGCGGTCGTTTGGTGATAACGCCACCAAAAGGCAGTGAATTCAAAACCCAAGATACATCGATTATTGGTAACACCTGTCTCTACGGCGCTACCGGCGGGAAACTCTTCGCCGCAGGCCGTGCTGGTGAGCGTTTTGGTGTACGTAACTCCGGTGTGCATGCGGTTGTCGAGGGTGTTGGTGATCACTGTTGTGAATACATGACAGGCGGTATGGTGACTGTGTTGGGTAGCACAGGCTACAACTTCGGTGCTGGTATGACGGGTGGTTTTGCCTATGTCCTCGATTTAGAGCGCCACTTCGTTGATAAATACAATCATGAGCTGGTAGAGATCCATCGGATTACCACCGAAGACATGGAAGACTACCGTGCGCATCTAAAAGCCGTGATCAAAGAATACGTGCGTGAAACCGACAGCCAGTGGGGCGCCCATATTCTTGAGAATTTCCAAGAGTTCGTTGAATCCTTCTGGTTGGGGAGAGGTAAAACAATGGCTGAAAGACTGAACAACGACTTCCAGTTTCTCGATGTCGGTCGTAAAGATCCGAACAAGAAAGCGATTAATTTACGCAAAGCTGAGTTTGTCGAAATCTACAAGCCTTTTAAGGAAGAGCAAGCCTCTTCCCAAGCCCATCGCTGCTTAGCCTGCGGTAATCCTTATTGTGAATGGAAATGTCCCGTTCATAACTATATCCCGAATTGGTTAAAACTGGTTTCCGAAGGCAATATCATGGAAGCCGTAGAGTTGTGCCACCAAACCAACACCTTGCCCGAAGTGTGTGGCCGTGTGTGCCCTCAAGATCGGCTTTGTGAAGGTGCCTGTACCCTGAATGACGGTTTTGGGGCTGTGACTATTGGTTCTGTGGAAAAATACATTACCGATACCGCCTTTGCCATGGGTTGGCGTCCCGACATGTCTCATGTGATACCCACAGGTAAACGAGTCGCCATTATTGGTGCTGGGCCTGCGGGTCTAGGTTGTGCTGACATTCTTGCGCGTGCGGGTGTTGATGCCGTGGTTTTTGATAAGCAACCTGAAATTGGTGGCTTGCTGACCTTTGGTATTCCAGAGTTTAAATTGGAAAAAAGCGTGATTACCCAGCGCCGTGAAATTTTTGAAGGCATGGGTATTGAGTTTCGTTTAAATACTGAAGTTGGCAAAGATGTCACGATGGAATCTTTGGTCAATGAATTTGATGCGGTATTTCTTGGTATGGGGACTTACACCTACATGCGTGGTGGATTCCCCGGTGAAGACCTTGAAGGTGTTTATGATGCCTTACCCTTTTTGATTGCGAATGTAAAAAACAATCTCGGCATGGAAACGGAAACCATCAGCGTTGAAGGTCAACGTGTTGTGGTTCTTGGCGGTGGTGATACCGCGATGGACTGTAATCGCACCTCTGTACGCCAAGGTGCAACCTCTGTTGCCTGTGCTTACCGTCGAGACGAAGAAAACATGCCGGGTTCTCGTCGCGAAGTGGCCAACGCTCGCGAAGAAGGCGTTAACTTTATGTTCAATCGCCAGCCTGTTGAAATCGTTGGCGATGGCAAAGTTGAAGGTGTAAAAGTGATCCGTACCCAGTTGGGTGAGCCTGATGCTAACGGCCGTCGTCGTCCTGAAGAAGTCCCTGGCAGCGAAGAAATTCTACCGGCGGATGCTGTGTTAGTCGCTTTTGGTTTTCGTCCAAGTCCTGCGGATTGGTTTGTTGATATGGGTATCGAAACAGACGAAAGCGGACGTGTTATTGCGCCAGAGAATGGTCGCTATCATTTCCAAACCACCAATGAAAAAGTCTTTGCCGGTGGCGATATGGTGAGAGGCTCTGATTTGGTAGTGACAGCCATCGCCGAAGGCCGTAAAGCAGCTGAAGGCATCCTTGACTATTTAGAAGTGTAA

Transcript

ANN34979-RA

Protein

Uniprot

Uniprot term	Description
E1V8I0	Glutamate synthase [NADPH] small chain OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) OX=768066 GN=gltD PE=1 SV=1
P09832	Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain K12) OX=83333 GN=gltD PE=1 SV=3
P37127	Putative oxidoreductase AegA OS=Escherichia coli (strain K12) OX=83333 GN=aegA PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07992	Pyr_redox_2	Pyridine nucleotide-disulphide oxidoreductase	Domain	Interproscan
PF01645	Glu_synthase	Conserved region in glutamate synthase	Domain	Interproscan
PF01493	GXGXG	GXGXG motif	Family	Interproscan
PF14691	Fer4_20	Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan
IPR023753	Domain	FAD/NAD(P)-binding domain	Interproscan
IPR002932	Domain	Glutamate synthase domain	Interproscan
IPR009051	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR002489	Domain	Glutamate synthase, alpha subunit, C-terminal	Interproscan
IPR051394	Family	Glutamate Synthase	Interproscan
IPR006006	Family	Glutamate synthase NADPH small chain-like	Interproscan
IPR028261	Domain	Dihydroprymidine dehydrogenase domain II	Interproscan
IPR036485	Homologous_superfamily	Glutamate synthase, alpha subunit, C-terminal domain superfamily	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43100	GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0006537	Biological Process	glutamate biosynthetic process	Interproscan
GO:0015930	Molecular Function	glutamate synthase activity	Interproscan
GO:0016638	Molecular Function	oxidoreductase activity, acting on the CH-NH2 group of donors	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0051539	Molecular Function	4 iron, 4 sulfur cluster binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K00266	gltD; glutamate synthase (NADPH) small chain	EC:1.4.1.13	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala