Genomic Location: Scaffold_115__1_contigs__length_55808:4328...6769
NR annotation: GEX25406.1, ATP-dependent zinc metalloprotease FTSH, chloroplastic [Tanacetum cinerariifolium]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN34983-RA |
| Transcript |
| ANN34983-RA |
| Protein |
| ANN34983-RA |
| UniProt accession | Description |
|---|---|
| C5BPV5 | Polyribonucleotide nucleotidyltransferase OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=pnp PE=3 SV=1 |
| Q1QSZ4 | Polyribonucleotide nucleotidyltransferase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=pnp PE=3 SV=1 |
| Q2SMK9 | Polyribonucleotide nucleotidyltransferase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=pnp PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004215 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03726 all species → | PNPase | Polyribonucleotide nucleotidyltransferase, RNA binding domain | Domain | Interproscan |
| PF00575 all species → | S1 | S1 RNA binding domain | Domain | Interproscan |
| PF01138 all species → | RNase_PH | 3' exoribonuclease family, domain 1 | Domain | Interproscan |
| PF00013 all species → | KH_1 | KH domain | Domain | Interproscan |
| PF00312 all species → | Ribosomal_S15 | Ribosomal protein S15 | Domain | Interproscan |
| PF03725 all species → | RNase_PH_C | 3' exoribonuclease family, domain 2 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012162 all species → | Family | Polyribonucleotide nucleotidyltransferase | Interproscan |
| IPR036345 all species → | Homologous_superfamily | Exoribonuclease, PH domain 2 superfamily | Interproscan |
| IPR000589 all species → | Family | Small ribosomal subunit protein uS15 | Interproscan |
| IPR012340 all species → | Homologous_superfamily | Nucleic acid-binding, OB-fold | Interproscan |
| IPR036612 all species → | Homologous_superfamily | K Homology domain, type 1 superfamily | Interproscan |
| IPR015848 all species → | Domain | Polyribonucleotide nucleotidyltransferase, RNA-binding domain | Interproscan |
| IPR003029 all species → | Domain | S1 domain | Interproscan |
| IPR020568 all species → | Homologous_superfamily | Ribosomal protein uS5 domain 2-type superfamily | Interproscan |
| IPR027408 all species → | Homologous_superfamily | PNPase/RNase PH domain superfamily | Interproscan |
| IPR009068 all species → | Homologous_superfamily | uS15/NS1, RNA-binding domain superfamily | Interproscan |
| IPR001247 all species → | Domain | Exoribonuclease, phosphorolytic domain 1 | Interproscan |
| IPR005290 all species → | Family | Small ribosomal subunit protein uS15, bacterial-type | Interproscan |
| IPR004087 all species → | Domain | K Homology domain | Interproscan |
| IPR004088 all species → | Domain | K Homology domain, type 1 | Interproscan |
| IPR015847 all species → | Domain | Exoribonuclease, phosphorolytic domain 2 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11252 all species → | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000175 all species → | Molecular Function | 3'-5'-RNA exonuclease activity | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0004654 all species → | Molecular Function | polyribonucleotide nucleotidyltransferase activity | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0006401 all species → | Biological Process | RNA catabolic process | Interproscan |
| GO:0006402 all species → | Biological Process | mRNA catabolic process | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| GO:0006396 all species → | Biological Process | RNA processing | Interproscan |
| GO:0003676 all species → | Molecular Function | nucleic acid binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00962 | pnp, PNPT1; polyribonucleotide nucleotidyltransferase | EC:2.7.7.8 | Transfer RNA biogenesis | ko03016 | deepkoala |
