Gene detail

Detailed information of ANN34984-RA in Leptoseris scabra

Genomic Location: Scaffold_115__1_contigs__length_55808:8329...10879
NR annotation: WP_076513474.1, translation initiation factor IF-2 [Oleibacter marinus]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34984-RA

ATGGCAGAAGTAACAGTTGAGCAGTTAGCAAAAGTTGTTGGTGCCCCAGTAGAACGGCTATTACAACAGATGAAAGAAGCCGGCTTAACCCAAACCAAGCCTGCTCAGACTGTTTCTGATTCAGAAAAGCAGACCTTGTTGGCTTTTCTGAAAAGAAGCCATGGTGAAACAGATGCGGAGCCTAAGAAAATCACGCTTAAGAGAAAAACAGTTGCCATCGAAGTACGGAAAAAGCGTACCTATGTCAAACGTGCTGTTGGTCAGGGCGAGGCAGAAAAAGAAACTGCGAAGGTCGCAGAAGATGTGGCAGAAACACCTGTTGTTGAAGATGTCACCGCTGAGGCTCCACAAGAGCAATCTATTACGGTAGATGTTGACGCTGCAACGGAAACACCTATTGTTGCCGAAACTGAAAGTGTAGAGGCTCAAGAAGCTCAGCCTGTTGAAAGTGCTGCGCCTTCTGAGCCCAAAGCGCCCACTGAAAACCAAGATGAGTCGATATCCGTCGACTTAAAAAATAATACCCCTGAAGATACCGTAAAAGACGAAGTTGCGACTCAGGTTCCAGCTGAGCCGAGTGCAGAAGCTAAAGCTGCACCAAAGCGTGAAAAAGCCAAAGAAGAGCCTCCAAAGAAGGCTAAAAAATCTAAAACCAAGTTTGACTCTGATGGCGACTCCTCTGAAGAAAAAGCAGGGCGTAAGACAGGTCGTCGTGGCGAAAAAACCCGTGGTGATTCCAAAGGCCGTACCAGTGTACGACAAGCCTTACAACTAGATTCGTCGGGTGATTTTGAAGACTTGGATTCAGGTTCAGGTAGGCGCCGTAAAGGTCGCGGTAAGCGTCGTGATCGTGATTCCAATAAGCATGCATTTGAAAAACCAACAGCTCCTATCGTTAGAGAAGTGGTTGTGCCTGAAGTAGTCACTGTCGGCGAGCTTGCTCATCAGATGGCGGTGAAAGCGCCAGAAGTTATTCGTGCTTTGATGAAAATTGGCGTTATGGCGACAATTAATGAGGCGTTAGAGCAGGATACAGCGGTACTTGTGGTTGAAGAAATGGGCCATAAGGTTAAGACTCGCGCAGATAACCAAGTCGAGATCGATATTGTTGACACTATTAGCTACGACGGGGAAAAGGTTGCTCGTGCGCCAGTCGTTACGGTAATGGGCCACGTTGATCACGCGCCCCACGTAGTTAAAGGTGAGTCTGGTGGCATTACCCAGCATATTGGTGCGTACCATGTGGAAACAGACCATGGTATGGTGACTTTCCTCGATACACCAGGCCATGCTGCATTCACGTCAATGCGGTCTCGTGGTGCTCAATGTACCGATATCGTGATTCTCGTTGTTGCCGCAGACGACGGTGTGATGCCCCAAACGGAAGAAGCTATTCAGCATGCTCGGGCTGCTGGTGTTCCTATCGTTGTTGCGGTGAATAAAATTGATAAAGAAACCGCCGACCCCGACCGTGTTAAAACGGAGTTGAGCCAGCGGGAAGTTATCCCTGAAGACTGGGGCGGCGATGTCCAATTTGTGAATGTTTCAGCCCACTCTGGTGAAGGTATAGAAGCGCTTTTAGAAGCTCTACTCCTTCAAGCTGAGCTACTCGAACTACAAGCTGTGCCCGAAGCTCCTGCCAAAGGTGTGGTCATTGAATCGCGTCTTGATAAAGGTCGAGGTCCTGTAGCGACTCTATTAGTACAGAACGGCACCCTAAACCAAAGCGATATTGTGCTTGTGGGCAAAGAATATGGGCGAGTTCGTGCATTAGTGAATGAGCTTGGTCAGAAAGTAGCAACCGCTGGACCTTCTATTCCCGTCGAAATCCTTGGATTAAGTGGGACCCCTGATGCGGGTGATGAATTCACGGTTGTTAGCGAAGAAAAGCAAGCTCGTGAAGTCGCACTGTTCCGTCAAGAGAAGGACAAGCAAGAAAACATTGCACGCCAACACGCGGCAAAACTGGATAGCTTGTTCTCTGACATGAGTAAAGGTCAGTTAAGTGCCCTGAACATTGTTTTGAAAACCGATGTAAGGGGTTCATTAGAAGCTATTAGCTCTGCCTTGATTGGTCTTGGAAATGATGAGGTCGCAGTCAATATTATTTCTAATGGTGTCGGCGGTATCACTGAGAGTGACGCCACTTTAGCCATGGCTTCCAATGCGGTTGTTTTTGGTTTTAACGTGCGTGCTGACCACTCTGCTAAACAGATTATCGAGTCCAACGGCTTAGATTTGCGTTATTATTCGGTCATTTATGATTTGATTGATGATGTTAAGCAAGCACTCACAGGTATGTTAGCACCTGAGTTGCGTGAAGAAATTGTCGGTACGGCTGAAGTTCGAGACACCTTTAAATCACCCAAGTTTGGTCAAGTTGCCGGATGTATGGTTGTGGAAGGTACCATTTTCCGGAATAAGAAAATCCGTGTGTTGCGTGACAATGTCGTGATTTTGAAGGCGAGCTAG

Transcript

ANN34984-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2SML3	Translation initiation factor IF-2 OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=infB PE=3 SV=1
C1DFK9	Translation initiation factor IF-2 OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) OX=322710 GN=infB PE=3 SV=1
Q21H61	Translation initiation factor IF-2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=infB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002610 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00009 all species →	GTP_EFTU	Elongation factor Tu GTP binding domain	Domain	Interproscan
PF11987 all species →	IF-2	Translation-initiation factor 2	Domain	Interproscan
PF04760 all species →	IF2_N	Translation initiation factor IF-2, N-terminal region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan
IPR000795 all species →	Domain	Translational (tr)-type GTP-binding domain	Interproscan
IPR036925 all species →	Homologous_superfamily	Translation initiation factor IF-2, domain 3 superfamily	Interproscan
IPR023115 all species →	Domain	Translation initiation factor IF- 2, domain 3	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000178 all species →	Family	Translation initiation factor IF-2, bacterial-like	Interproscan
IPR009061 all species →	Homologous_superfamily	Putative DNA-binding domain superfamily	Interproscan
IPR015760 all species →	Family	Translation initiation factor IF- 2	Interproscan
IPR006847 all species →	Domain	Translation initiation factor IF-2, N-terminal	Interproscan
IPR044145 all species →	Domain	Translation initiation factor IF-2, domain II	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43381 all species →	TRANSLATION INITIATION FACTOR IF-2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02519	infB, MTIF2; translation initiation factor IF-2	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.