Gene detail

Detailed information of ANN34989-RA in Leptoseris scabra

Genomic Location: Scaffold_115__1_contigs__length_55808:20045...22587
NR annotation: CAE7874961.1, carB [Symbiodinium microadriaticum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34989-RA

ATGGCTATCGGCCGTTCGATGCAAGAGTCGATGCACAAAGCCATTCGTGGCCTAGAAACAGGCGTGGATGGTTTTGTGCCTATGGTCGCTCTTGGGGCCGATGATGCAGAAAATACACTGAAGCGAGAGCTAAAAAATGCCAAGCCAGATCGTCTCTGGTACGTAGCAGATGCTTTTAGACATGGCTTTGATTTACCGCAGCTATTTGAATTGACGGGTATAGATCCATGGTTCTTGGCTCAAATCCAAGATCTTGTTGAAGAAGAGCAGGCGCTTGCTCAGGCGGGTTTAAATAGCCTTGATTATGATGGCTTCTTCAGGCTCAAGCAAAAAGGCTTTTCTGATTCGCGTCTTGCGGCTGTTCTTGGTGAATCTGAGCAAGTTGTTAGAGATAAGCGTTTGGCCTTAGGTGTTAAGCCGGTGTTCAAACGAGTAGATACTTGTGCGGCAGAGTTTGCCGCAAACACGGCTTATATGTATTCCACTTATGAAGAAGAGTGCGAAGCGAATCCGAGTAATAAAGATAAGATCATGGTGATCGGTGGTGGCCCTAACCGTATTGGCCAAGGCATTGAATTTGATTACTGCTGCGTGCACGCGGCATTAGCGATGCGCGAAGATGGTTATGAAACTATCATGGTTAACTGTAACCCTGAAACGGTTTCGACGGATTATGATACATCTGATCGTCTGTTCTTTGAGCCTATTACTCTCGAAGATGTATTAGCCATTGTTGATCTTGAAAAGCCTAAAGGCGTGATTGTGCAATACGGTGGCCAAACACCCTTGAAGCTTGCTCGTTCTTTAGAAGCCGCTGGCGTGCCCATTATTGGTACTTCTCCCGATGCAATTGATCGAGCGGAAGATCGCCAGCGTTTTCAGCAGATGATTGAGCGTTTAGCGTTAAAGCAACCCGCTAATGCGACTATTACCGATGTTGAGGCAGGTCTTGCGGCGGCCGAAACCATTGGCTATCCGCTAGTCGTTCGCCCTTCCTACGTGTTAGGCGGGCGTGCTATGGAGATTGTTTACAATGGCGAGGAACTTAAGCGCTATCTGCGTGAGGCTGTTGAGGTTTCCGATAACTCTCCTGTATTGCTTGATCACTTTTTGAATGCTGCTATTGAAGTTGATATTGACGCGATTTCTGATGGTCAGTTCGTTGTGATTGGCGGCATCATGGAGCATATTGAGCAAGCAGGTGTTCATTCTGGTGACTCAGCGTGCTGCATTCCGCCCCACAGCCTGCCCGCTGATGTCTTAGATACTATGCGCGAACAGGTCAAGGCCATGGCCCTAGAGTTGGGCGTGGTAGGACTTATGAATGTGCAAATGGCTTATCAAGATGGTGAAATTTACGTTATCGAAGTGAATCCACGCGCTTCTCGCACAGTGCCTTTTGTATCCAAAGCCATAGGTCGTTCGTTGGCGAAGATTTCTGCTCGTTGTATGGCAGGGCAATCTCTTGCTGATCAGGGGTATACAGAAGAAGTAATTCCTAACTACTACGTGGTTAAGGAAGCTGTTTTTCCTTTCAATAAATTCCCAGCTGTTGACCCGATTCTCGGCCCCGAAATGAAATCGACAGGTGAAGTTATGGGAGTTGGCGACACCTTTGCAGAAGCTTTTTCTAAAGCCCATGCTGCTACGGGTGAAACCATTCCCACCACAGGTCGAGCCTTTATCAGTGTGCGCGACGTGGATAAGAGTGGCGTATTGGAGTTATGCGAATTATTGCTTAAACATAAATTCGATCTTGTGGCCACAAGAGGTACGGCTAAGGTTCTTATTGATGCAGGTTTACCTGTTGAGATTATCAACAAGGTGACGGAAGGTCGGCCTCATGTGGTTGATATGTTGAAAAATGATGAGATAGCCTTGATTATAAATACCACGGAAGGCAAACAAGCCATTGCGGACTCCTCGACAATTCGTCGTTCAGCCCTACAGCAAAAGGTCTGCTATTCCACCACATTGGCTGGTTCTAAAGCGATTTGTATGGCTTTGGATTTTGGCGAACACACTGAGGCGTTGCGTGAAGAACTCCATCATCTTAAAACAGTTGAAAGACCGAAAATTATTGAAGCTATTGCTGAGGCTCGTGAGCATGGAGATTTAAAAGAGAACGCTGAATACCATGCAGCACGAGAGCAGCAGAGTTTTGCTGAAGGTCGTATTCAAGAGATTGAAGGCAAGCTGGCTGAAGCGCAAATCATTGATGTGACCCGCCTTGAAAATACCGGGAAGGTGATTTTCGGTGCCACTGTTGTACTGTCGAATCTCGATACAGAAGAGAGTGTTCGCTACCGCATTGTCGGTGATGACGAGGCAGACATTAAAAATAATATGATTTCTGTTTCTTCCCCAATTGCACGTGCGCTTATCGGCAAGGAAGAGGGTGATATCGTGGCTGTCCGCGTACCTAGCGGTGAAGTCGAGTATGAAATTGACGAAGTGCTTTATATTTAA

Transcript

ANN34989-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P38100	Carbamoyl phosphate synthase large chain OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=carB PE=3 SV=3
Q87WP4	Carbamoyl phosphate synthase large chain OS=Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000) OX=223283 GN=carB PE=3 SV=1
Q8RSS3	Carbamoyl phosphate synthase large chain OS=Halomonas eurihalina OX=42566 GN=carB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0013299 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02786 all species →	CPSase_L_D2	Carbamoyl-phosphate synthase L chain, ATP binding domain	Domain	Interproscan
PF01272 all species →	GreA_GreB	Transcription elongation factor, GreA/GreB, C-term	Domain	Interproscan
PF02787 all species →	CPSase_L_D3	Carbamoyl-phosphate synthetase large chain, oligomerisation domain	Domain	Interproscan
PF03449 all species →	GreA_GreB_N	Transcription elongation factor, N-terminal	Domain	Interproscan
PF02142 all species →	MGS	MGS-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028624 all species →	Family	Transcription elongation factor GreA/GreB	Interproscan
IPR011607 all species →	Domain	Methylglyoxal synthase-like domain	Interproscan
IPR036805 all species →	Homologous_superfamily	Transcription elongation factor, GreA/GreB, N-terminal domain superfamily	Interproscan
IPR036914 all species →	Homologous_superfamily	Methylglyoxal synthase-like domain superfamily	Interproscan
IPR016185 all species →	Homologous_superfamily	Pre-ATP-grasp domain superfamily	Interproscan
IPR005479 all species →	Domain	Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain	Interproscan
IPR005480 all species →	Domain	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain	Interproscan
IPR006359 all species →	Family	Transcription elongation factor GreA	Interproscan
IPR001437 all species →	Domain	Transcription elongation factor, GreA/GreB, C-terminal	Interproscan
IPR033937 all species →	Domain	Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain	Interproscan
IPR011761 all species →	Domain	ATP-grasp fold	Interproscan
IPR022691 all species →	Domain	Transcription elongation factor, GreA/GreB, N-terminal	Interproscan
IPR036897 all species →	Homologous_superfamily	Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily	Interproscan
IPR036953 all species →	Homologous_superfamily	Transcription elongation factor GreA/GreB, C-terminal domain superfamily	Interproscan
IPR018151 all species →	Conserved_site	Transcription elongation factor, GreA/GreB, conserved site	Interproscan
IPR005483 all species →	Domain	Carbamoyl-phosphate synthase large subunit, CPSase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11405 all species →	CARBAMOYLTRANSFERASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0032784 all species →	Biological Process	regulation of DNA-templated transcription elongation	Interproscan
GO:0070063 all species →	Molecular Function	RNA polymerase binding	Interproscan
GO:0004088 all species →	Molecular Function	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006541 all species →	Biological Process	glutamine metabolic process	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01955	carB, CPA2; carbamoyl-phosphate synthase large subunit	EC:6.3.5.5	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.