Gene detail

Detailed information of ANN34990-RA in Montipora grisea

Genomic Location: Scaffold_6472__1_contigs__length_26941:13385...17807
NR annotation: MCG8463510.1, NAD-glutamate dehydrogenase [Xanthomonadales bacterium]
Species Montipora grisea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN34990-RA

ATGAATTTTGATTTAACCGAAGAACAGCAGATGATTCAGTCTGCAGCGCGCGATTTTGCGCAAAATGAAATTGCTCCCGTGGCCGCCGACTTCGACCAAAGTGGCGAGTTTCCGCTGAGCAATATCCAAAAAATGGGTGAACTGGGTCTGATGGGTATCGAGGTACCTGAAGCGTACGGCGGTGCTGGCCTGGACACCATCGGTTATGCCCTGGCGATGATCGAAATCTGCGCCGCAGATGCCGCCCACGGCACCATTGTTTCTGTGAACAACTCGCTGTTCTGTAATGGCCTGCTGAAATACGGTACCGAAGAACAAAAACAAAAATACGTTCGCGCTATCGCCACCGGCGAAGAGATCGGTGCGTACGCCTTGACCGAGCCGCAATCGGGCTCCGACGCTGCCGCGATGCGCTCGCGCGCTACTTTGTCTGAAGATGGCTCGCATTATGTAATTAATGCGAAAAAATCCTGGATTACTTCGGGCCCTGTGGCTAAATATATTGTATTGTTTGCAGTAACAGATCCTGACGCCGGTGCTCGTGGTATCACCGCGTTTATGATCGATACTACAAAAGCCGGTTTCAGCCGTGGTAAGACCGAACCCAAACTGGGTATTCGTGCTTCTGCCACTTGCGAAATCGAGCTGGAAGGCTACCAATGTCCGGTGGAAGACCGCCTGGGCGAAGAAGGCCAAGGCTTTAAGATTGCGATGAGCGTGTTGGACGCTGGTCGTATCGGTATTGCCGCGCAAGCGGTGGGTATTGCCCGCGCTGCTTACGAAGCCACTTTGGAATACGTGCGTGAGCGCAAAGCCTTTGGTCAACCCATCGGCAGCTTCCAAATGACTCAAGCCAAAATTGCCGACATGAAAACCAAGCTGGACGCCGCACAGCTATTAACCATGCGCGCCGCTTGGGCCAAGATGCAAGCCGATAAAAACGGCGGACGTTTTGGTGTTGAAGCCAGCACGGCAAAATTATTCGCTTCTGAAAGCGCCATGTGGATCGCACATCAAGCCGTGCAGATTCATGGTGGAATGGGATACAGCAAAGAAATGCCAGTGGAACGTTATTTCCGTGATGCGAAAATCACCGAAATCTACGAAGGCACCAGTGAAATTCAACGTATGCGGGGCGATATCTCAAAACAAGATCTGATCCAACAAATTGCCGCTCTCGACGAGAGCGGCTTTTTATATGGTGACGGTGTTGCCGGTTTTGCCGCTCAGTTGTATGCCCGCGTTCCGGGGGAGGAACTTGGCCATACCACGCCAAAACTATTGAGTGGACTCGCCAATAATCTGGCGCGTTTCATCGCCCATCGCCCCAACGGCGATAACGCTGTGCGGGTTTATAACCCCGACCCTGAAGCCCATGGCTGGAATTCTCGTCACACCATCGTTGAGATGGTGAACGATGACATGCCCTTCTTGGTCGATACGGCCTGTATGGTGTTAACCGAAATGGGCCTAAGCATCCATCGTGTGGTGCATCCGGTTATTTCGGTCGTACGCGATGACGAAGGCCGCATTACCGAGCTCTTGCCCAGAGGCGATGAGAACGGTCGGGCTGAGTCTGTTATTCATATTCAAATCGACCGCTTGGGCGACACGGGTATCTTTAACCGTGTTGAAAAACGTCTGCTCGAATCATTACGCGATGTTCGTCATGCGGTTGAAGACTGGCCTGAAATGCGCGCCCGCGCCGAGCAGGTGGCCACTTCTTTACCCGCCATGGTGCCCGGCAGCGATGAAGCGCAAATGCTGGAAACCCAGGCTTTCTTGAAATGGTTGGCCGACGATCACTTCACCTTCTTAGGTTATCGGAAGTATCTGATTACCAATGGTGAAAATGATCGTGAGCTGGATATCGAGAACGGCAGCGGTTTGGGTATTTTGCGCGAAATGCGTCAAACCAAACCGCGCAAGCTCGATACCTTATCGGGCCCTGCGCGTGAGCGTGAAGATCACCTCGATGCGGTGATCATCACCAAGACCAACGCCCGCTCCAGCATTCACCGCAGCGGTTACATGGATTATGTAGGCGTGTTGGAGTACAACGAGGCCGGAAAAGTGGTGGCCGAACACCGCTTCTTAGGCTTGTTTACCTCCGGTGCTTACAACCGTAGCACCCGCGATATTCCTCTGGTGTGTCGTAAAGTTCGCGCCGTGGTCGAGCATTCGGGCCTGCGCCCGCGCAGCCACGAAGGCAAAGCCTTAATCCATATCTTAGAAACCCTACCGCGCGACGAGTTATTCCAAAGCAGTGTCGATGAACTCTATGAGTTATCGATGGGTATCTTGGATTTACAAGAACGTCCGAAAACGCGCCTGTTTATGCGCTGCGAAATGTTCGGCCGTTTTTACTCGTGCATGGTGTTTATTCCACGCGATCGCTTTAACACTGAAAATCGCGAGAAAATCCAGGCCACATTAAAACGTGCGCTGCGTGCCGAACACTTAGATTACGCGGTGCATGTGTCCGACTCGAATATGGCGCGTTTACACGTCATTTTGCGTCTGAAGCCTAACTCAGCCCCCGAGTTCGATGTCTTAGATATCGAAAAACGTATCGTGGATATCGTGCGTTCCTGGCACGATGAGTTAAAAGCGACCTTGGTCGACCGTTTAGGTGATCAAGAGGGGATTCAGCTCAGCGAACGTTTTGGTAAGGCGTTCCCGGTTTCTTATATCGAAGATGTAACGCCTTGGGTGGCTTCTTTCGATGTGCGCAAAGCCGCTTTGCTGATGCCCAGTGAGGCCGGCGGTGCCGGTAGCGATCTGCAAATGAGCTTGTATCGCCCCCGGCGCCACACTGAAGACCCCAATATGTTGCGCTTCAAGGTTTTCCGGCGTCAGCGCCCGTTAGCCTTGAATCAAATTTTACCCATGTTGGAAGGTTTGGGTTTACGCATTGTTAGCGAGCGCCCTTACGAATTACAAATGAGCGCCACTGAGACCATCTGGATTCAAGATCTGGATATGGTGCCGGTGGACTCGGGCAATATCGATCTGGATGCAGTGGAAGACAACTTCCAAGAAGCCTTCCGCCGTGTTGCCGCAGGCGAGGCCGAAAGCGATGCCTTGAATCGTTTGGTACTCAGTGCGCAAATGAACTGGCGTCAGGTGGGTATGTTGCGTGCGTACTGCCGTTATTTGCAGCAAACCGACTTGCCTTTATCGCAGAACTATATTGAAGAAACGCTGGCTCGCCATCCGATTTTGGCGCGCTTATTGGTGACTAAGTTCGAAACATTGTTCACCATCAGCGATGGACAGTTGTCTCACGCACGCCGCAGCGCCAAACGCAGCTTCAAATGGTTGTTGCAGCAAGACTGCAATAACAGCGCCTTGGTAGAAGCTGTACAGGCGCTGATGGAGCAAAGCAAAGCCACCCGTGACGAGGCCCGCGCACTCATTAAAACCGCCATGCGTGCCGGTCTAGATGCTATCAGCAGTCAAGATGAAGATCGCATTTTGCGTGGTTTCCTGGCCTTAATTAAGGCCACTTTGCGCACTAATTTTTATCAGCTCACCGCAGAGGGTGAAGCGCCCGAGTATCTTTGCTTCAAGCTGGATTCCGCATTGGCTCCCGAGCTTCCCAAGCCGCGCCCGTATCGTGAGATTTGGGTGTACTCGCCGCGCGTTGAAGGTGTTCACTTGCGCGCCGGTGAAGTGGCCCGTGGTGGCCTGCGCTGGTCTGATCGCCGTGAAGATTTCCGAGCAGAAGTACTTGGCTTGATGAAAGCGCAGCGGGTGAAAAACACCTTAATCGTTCCGGTGGGTGCGAAGGGCGGCTTTGTGGTGAAACGTCCGCCTAGCGAAGGTGGCCGTGAAGCGTTGAACCAAGAAGTCGTGCACTGTTACCGCACCTTCATCACCGCCTTATTGTCGATCACCGATAACCGCAAAGACGAACAACTCATCGCGCCGCGCGATGTGGTTCGTCGTGACAGCGATGACCCATACTTGGTGGTAGCCGCCGATAAAGGCACCGCCACTTTCTCCGATATCGCCAATGGCGTCGCTCAGGATCACGAGTTCTGGCTCGACGATGCCTTTGCTTCTGGTGGCTCCAACGGTTACGACCACAAAGGCATGGGTATTACCGCCAAAGGTGCTTGGGAATGGTGTCGAAACGCCATTTCCGAGAAATGGGTGTGGATACCCCAAACCACCGATTTCACCGTGGTGGGTGTTGGCGATATGAGCGGCGACGTATTCGGTACGGCATGTTGCTGTCGCGCCATATTCGCCTGCAAGCGGCCTTTAACCATCTGCATATCTTCATCGATCCGAATCCCCGACTCGGCCACCGGTTTTGAAGAGCCGCCAACGCTTATTTGA

Transcript

ANN34990-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1V4J5	NAD-specific glutamate dehydrogenase OS=Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9) OX=768066 GN=gdh PE=1 SV=1
Q9HZE0	NAD-specific glutamate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=gdhB PE=1 SV=1
A0R1C2	NAD-specific glutamate dehydrogenase OS=Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) OX=246196 GN=gdh PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0017361 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21073 all species →	GDH_HM1	Glutamate dehydrogenase, helical motif 1	Motif	Interproscan
PF21079 all species →	GDH_HM2	Glutamate dehydrogenase, helical motif 2	Motif	Interproscan
PF21077 all species →	GDH_ACT3	Glutamate dehydrogenase, ACT3 domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF21078 all species →	GDH_HM3	Glutamate dehydrogenase, helical motif 3	Motif	Interproscan
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF21076 all species →	GDH_ACT2	Glutamate dehydrogenase, ACT2 domain	Domain	Interproscan
PF05088 all species →	Bac_GDH_CD	Bacterial NAD-glutamate dehydrogenase, catalytic domain	Domain	Interproscan
PF21075 all species →	GDH_ACT1	Glutamate dehydrogenase, ACT1 domain	Domain	Interproscan
PF02770 all species →	Acyl-CoA_dh_M	Acyl-CoA dehydrogenase, middle domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046346 all species →	Homologous_superfamily	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Interproscan
IPR007780 all species →	Family	NAD-glutamate dehydrogenase, bacteria	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR049059 all species →	Conserved_site	NAD-glutamate dehydrogenase, helical motif 1	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR049058 all species →	Conserved_site	NAD-glutamate dehydrogenase, helical motif 2	Interproscan
IPR006089 all species →	Conserved_site	Acyl-CoA dehydrogenase, conserved site	Interproscan
IPR049064 all species →	Domain	NAD-glutamate dehydrogenase, ACT3 domain	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR049056 all species →	Conserved_site	NAD-glutamate dehydrogenase, helical motif 3	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR049062 all species →	Domain	NAD-glutamate dehydrogenase, ACT2 domain	Interproscan
IPR028971 all species →	Domain	NAD-glutamate dehydrogenase, catalytic domain	Interproscan
IPR024727 all species →	Domain	NAD-glutamate dehydrogenase, N-terminal ACT1 domain	Interproscan
IPR006091 all species →	Domain	Acyl-CoA oxidase/dehydrogenase, middle domain	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43403 all species →	NAD-SPECIFIC GLUTAMATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004352 all species →	Molecular Function	glutamate dehydrogenase (NAD+) activity	Interproscan
GO:0019551 all species →	Biological Process	obsolete glutamate catabolic process to 2-oxoglutarate	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0003995 all species →	Molecular Function	acyl-CoA dehydrogenase activity	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN34990-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Montipora grisea tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Montipora grisea, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →