Detailed information of ANN34992-RA in Leptoseris scabra

Genomic Location: Scaffold_115__1_contigs__length_55808:35310...35792
NR annotation: WP_163649691.1, SsrA-binding protein SmpB [Modicisalibacter sp. 'Wilcox']
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A1U622SsrA-binding protein OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=smpB PE=3 SV=1
Q1QSW3SsrA-binding protein OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=smpB PE=3 SV=1
Q2SMN6SsrA-binding protein OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=smpB PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0015934 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01668
all species →		SmpBSmpB proteinFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR023620
all species →		Homologous_superfamilySmall protein BInterproscan
IPR000037
all species →		FamilySsrA-binding proteinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR30308
all species →		TMRNA-BINDING COMPONENT OF TRANS-TRANSLATION TAGGING COMPLEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0070930
all species →		Biological Processtrans-translation-dependent protein taggingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03664smpB; SsrA-binding protein-Protein processing-deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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