Gene detail

Detailed information of ANN35004-RA in Leptoseris scabra

Genomic Location: Scaffold_1872__1_contigs__length_24209:7878...17437
NR annotation: CAI3980217.1, unnamed protein product [Cladocopium goreaui]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35004-RA

ATGAACTGGGCAGCTGAGGACACCTTGGCAAAGTTCCTGCAGGAGGATTCGGCCTCCCGAGAGATTTTGCAGACTGAGGCCCAAGAAATGAAGACTCCTGAGGTGCAGGACCTACTGCCCTATGGCTTTGCGGTGCACCATGCTGGACTGCCTCGTGCGGATCGAAAGCTGGTGGAGGAGAGGTGTCCAGAGGTCTCAATTGGATCATGGATTGATCATGTGATGATTGTGATGGATTTGTACGCGGATCGCCACATTCAAGTCTTAGTCTCGACTGCCACGTTGGCTTGGGGTGTCAACTTGCCGGCGCACACCGTCATCATCAAAGGAACCCAGGTGTACAACCCACAGAAGGGCCAGTGGGATGAGTTGTCTCCCATGGACATGCCACTGGTTCGCACTGGTTCGCAGAATGAAGACACTAGCAGACCACCAACACCAAAGACACTTCCAAGGATGCAGATGCTGGGTCGAGCCGGACGACCGCAGTATGACAAGACAGGGCACGGCATCGTCATCACGCAGCACAGCGAGTTGCAGTACTACTTGTCTCTGATGAACCAGCAGTTGCCCATTGAGTCGCAGGTGCTCAGCATTCTGCCTGACATGGTGAATGCAGAATTGGTGCTGGGAACTATCCAGACTCGACAGGACACCGGCAAAACTGATGCTGTGAATTGGCTGGGCTACACGTACCTGTACGTCGCAGCCCCAAGTCGTTGCGGTGAACCCTTCAAAGAAAGTTATCATGGGCCCAGATCGATTGAGGTGCGAATGATGCGGGCTCCGAGGCTGTACGGCATCTCGCCGGATGAAGCTGAAGAGGATCGGCTGCTGGAGCAGCGACGTGTCGATTTGATCCACAGCGCCTTGACGATGCTTGACAAGAACAATTTGATCAAGTACGACAAGCGAACTGGACAGGTTCAGGTGACCGCTCTTGGTCGCGTCGCGAGCCACTACTACATCCAGCATCCATCCATTGCAACATACAACGACCACCTTCGGCCGATGATGTCCGACATTGAACTGCTGCGTTTGTTCTCCCTTTCGCATGAGTTCAAGTACATCCCAGTGCGCGAAGAGGAAAAGGTCGAGATGCAGAAACTGGTGGAGCGCGTGCCGGTTCCAGTGAAGGGCAGCACCGACGAGCCCTCCTCCAAGGTCAACGTGCTGCTGCAGGCCTACATCTCCAAGTTGAAGCTGGAGGGTTTTGCTCTCATGTCAGACATGGTCTATGTTCAGCAATCGGCCGGACGAATCATGCGTGCGATCTTTGAGATCTGTCTGCGACGAGGCTGGGCAGCGCTGGCCTTGAGGGCCCTGAATTGGTGCAAGATGATCGACAAGAGGATGTGGGCCAGTCAGACGCCTCTGCGTCACTTCAAGGGTCTGGCCGAAGATATCTTGCGGAAGGTGGAGAAGAAGGACTTTGCATGGGAGCGCTACTACGATCTCTCCAGTTCGGAGATTGGTGAGCTGATTCGCTTCCCAAAGATGGGCAAAACCATCCACAAGTTGGTTCACCAATTCCCAAAGCTGGACTTGAGTGCCTATGTCCAACCCATCACTCGCTCCTGTCTCATGGTGGAGCTGACCATCACACCGGACTTCCAGTGGGATCCAAAGGTCCACGGCCGCGCCGAGCCCTTCTGGGTTTTTGTGGAGGATGTGAATGGAGAGCAGATTTTGCACCAGGACTGGGCCAGGGTTGAAAGGTACTTCATCCGAGTGGTCTCGGACAGGTGGATCAACGCACAGACCTTGCTTCCGGTGTCCTTCCGGCATCTGATTTTGCCCGACAAGTACCCACCCCACACCGAGCTGTTGGACTTGCAGCCCTTGCCTCTCACGGCCTTGCGCTGCCCAGATGCTGAGAAGTTGTATGCGGCACAGGGCTTGAAGGTCTTCAATCCCATTCAGACGCAAACTTTCAGCATGTTATACTCCAGCAATGACAACTGTTTGGTGTGCGCCCCTGCAGCCTCCGGAAAGATCATTTGTGCCGAGTTCGCCGTCTTGAAGATGTTGACCTCAGATGATCCCGTGAAGCGATGTGTCTATGTGGCACCACATGCTTCCACGGCAAAGGAGCGCTTCAACGAGTGGTCCTTCAAGTTTGGAAAGTCCATGGGTTTCCGAGTCTCTGAGTTGGTTGGAGAGACCACGAGTGATGTGAAGATCTTGGAAGATTCCCACATTGTCATCACCACCCCTGAGAAGTGGGATTTGATGAGCCGCAGGTGGAAGACACGAAAGAGCGTGCAAGAGGTTCGTCTCTTTGTGGTTGATGAACTCCACCTGTTGGACAGCGATGTGGGCCCCACCCTGGAGGCCGTGGTGAGTCGCATGCGTTACATTTCGGTGCAGGTGCAGCAGCCCATCCGAATCGTGGCCTTGGCGGCTTCCTTGGCCAATGCCAAGGATGTGGGGGAATGGATCGGCGCTGGCAGCAACGGGTTGTTCAACTTCTCACCCAACGTGCGAACGGTGCCCTTGGAGCTGGTCATCCAGGGTTTCGACATTCACCACCGTTCCACGCGTTTGTTGGCGATGAGTAGACCAGTGTATCAATCCATCAAGCAGTTCTCCCCAGAGAAACCGGTCATCGTCTTTGTCCCTGACCGAAAGCAGGCGCGAATGACGGCCATCGATCTGTTGTTACACGCCGCGTCAGACGACAAGCCCAAGCGCTTTCTGCACGTCTCGGATGATGCCATGCGTCCTCATTTGGCAGCTGCCAGGGAGAAGTCGCTGAAGCAGACACTGGAGTATGGTGTTGGCTTCCTCCATGAAGGCTTCAGTGCCACGGAGCGTGCGGTGATCGAACGTCTCTTCGAGGCGGGTGCCATCCAGGTCTTGGTGGCTACTGAGCAGCTCTGCTGGGGGATGACGATGTTGGCACATCTGGTGGTCATCATGGACACCAAGAAGTTCGATGGTCGTGAGAACCGATATGTGGACTACCCCATCCATGATGTCTTGCAGATGATGGGTCGAGCCAGTCGTCCGGGCATTGATCAATCTGGGATGGTGGTACTGTTGACGCAGAACTCCAAGAAGGAGTATTACAAGAAGTTCATTTATGAGCCTCTGCCGGTCGAAAGCCATCTTGATCAGCGGATGGCTGACCACATGAATGCTGAGATCGTGATGAAGACCATTGAGAACAAGCAGGATGCTGTCGATTGGTTGACCTGGACCTTCTACTACCGTCGTTTGTCCCAGAATCCCAATTATTACGGATTGCAGGGTGTGACCCATCAACATCTCAGTGATCACCTTAGTGAAGTCGTGGAAAACACCGTGGAAGGTTTGGAACGCTTTGGCTGTTGCAGCATCGAGGACGATGTGGACCTGGCTCCGGCCAACTTGGGTCTCATTGCGGCCTATTACTACATCCGCCACACGACCATCGAAACCTTCTCTCGCTGTGTCAATGAGAGCACCAAGCGCAAGGGCTTGTTGGACATTTTGTGTGCTGCCTCGGAGTTTGATGCGGTGCCAGTGCGCTCCGGAGAGGAAGCCACATTGTATGGCTTGGCTCAATCCTTGGGAATGAAGGTGGACAAGGACAAGTTGAATGATCCTCACACCAAAGCCCAACTTTTGTTGAATGCGCACTTCACACGTACTCCCATCACTACGGATCTGTCCTCAGATCAGAAGTTTATCTTGGAACATGCTGTGCGACTACTCCAGGGCCTGGTGGATGTGATTTCTTCCTGCGGTTGGCTTACACCTGCCTTGTCTGCCATGGAACTCTCGCAGATGATCGTGCAAGCCACCACCTCCACATCCAGCCCCCTGATGCAGTTGCCACACTTCTCACCAGCCATGGTGGACAAAGCCAAGAAGCTTGTAGCAAACATGAGCAACTGTTGCAACCATGAGTCTTAA

Transcript

ANN35004-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P4T2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Mus musculus OX=10090 GN=Snrnp200 PE=1 SV=1
O75643	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens OX=9606 GN=SNRNP200 PE=1 SV=2
F1LNJ2	U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Rattus norvegicus OX=10116 GN=Snrnp200 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001413 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02889 all species →	Sec63	Sec63 Brl domain	Family	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR050474 all species →	Family	Helicase Hel308/SKI2	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR004179 all species →	Domain	Sec63 domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47961 all species →	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35004-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.