Detailed information of ANN35006-RA in Leptoseris scabra

Genomic Location: Scaffold_95__1_contigs__length_60704:3316...4644
NR annotation: WP_208654098.1, MULTISPECIES: cysteine--tRNA ligase [Halomonas]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C1DHE6Cysteine--tRNA ligase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) OX=322710 GN=cysS PE=3 SV=1
Q1QVV6Cysteine--tRNA ligase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=cysS PE=3 SV=1
A4VL73Cysteine--tRNA ligase OS=Stutzerimonas stutzeri (strain A1501) OX=379731 GN=cysS PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002418 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09190
all species →		DALR_2DALR domainDomainInterproscan
PF01406
all species →		tRNA-synt_1etRNA synthetases class I (C) catalytic domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009080
all species →		Homologous_superfamilyAminoacyl-tRNA synthetase, class Ia, anticodon-bindingInterproscan
IPR024909
all species →		FamilyCysteinyl-tRNA synthetase/mycothiol ligaseInterproscan
IPR015803
all species →		FamilyCysteine-tRNA ligaseInterproscan
IPR015273
all species →		DomainCysteinyl-tRNA synthetase, class Ia, DALRInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR032678
all species →		DomaintRNA synthetases class I, catalytic domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10890
all species →		CYSTEINYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000166
all species →		Molecular Functionnucleotide bindingInterproscan
GO:0004812
all species →		Molecular Functionaminoacyl-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006418
all species →		Biological ProcesstRNA aminoacylation for protein translationInterproscan
GO:0004817
all species →		Molecular Functioncysteine-tRNA ligase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006423
all species →		Biological Processcysteinyl-tRNA aminoacylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K01883CARS, cysS; cysteinyl-tRNA synthetaseEC:6.1.1.16
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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