Gene detail

Detailed information of ANN35010-RA in Leptoseris scabra

Genomic Location: Scaffold_95__1_contigs__length_60704:22116...25862
NR annotation: GEX30934.1, hypothetical protein [Tanacetum cinerariifolium]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35010-RA

ATGAGTCAAGTTAGTGCTGTCGACGTGAGTCAATTCACTTGTCTTGAGCAATGGTTAACTTGGCAAGAAACCTTACATCCTCAAAAGATTGACTTGGGTTTAACACGAGTCAAAGAGGTGGCTCAAAGGCTAGATTGTTTGCGCCCTGCAAAGACAGTCATCACGCTTGCGGGCACCAATGGTAAAGGCACAACTATCGCAACCTTGGCGCGTTGTTTGCGAAGCCAGGGTGTGGCAATTGGTGTCTTTACTTCTCCTCATTTATTGAATTACAACGAGCGCATTCAGCTTAACGATCGCTTTGTTTCGGATGCAGAACTTATTGATGCCTTCGAACGAATCAATCATGCCCGCGGTGACATATCTTTAAGTTACTTTGAATTTTCTGCCTTGGCGGCTTTTGTTCTTATGGCAGATGCGGACTTAGAGGTGGCTTTGTTGGAGGTAGGGCTGGGCGGGCGATTGGATGCGGTCAATATTATTGATGCTGACCTCGCAGTGATTACCATGATCGATATTGATCATCAGCAGTGGTTGGGAGAGACGCGAGAAGCCATTGCTAAAGAAAAAGCCGGGATCTTGCGCGAAGGAATTCCTGTCATATGCACAGACCCCAATCCTCCACAGAGTTTGTTGGCTGCTATCGAGACCCTCGATTGTGTTTTCTATCTTCAAAATCAAGCATTTAGTATTCGACAGGAAGAAAGCCAACTTTATTGGTCTGGAGGTTTAGATCAACAGGAACTTTCTTTGGTACTACCTGCTGTCCCCCAACTACCTCATTTAAATATTTCGGCGGCGCTACAAACATTGGCGGTTCTTGATAAGCTACCAAACGCCGAGGCTTTAACCGAGTTATTGGCCAATACTCAAGTGCCAGGGCGTTTTCAGCGTTTATGCTATGAAGGTGTCGAGTTACTCTTTGATGTTGCTCATAATGCCCAGTCTGCCCAATACCTTGCGAGTAAGTTAAAAGAAGAAACCGATGTTTGTTGGTTAGGCGTGTTTTCTGGTTTGTGCGACAAAGAGCTAACCTCTGTTCTGAAACCGGTGGAGCCTCATGTGGCGCGTTGGTTTATCGCTCCAACAGATTCTTATCGAAGTGCGACGTTAGATGAGTTAGAAAAGGTATTGACACAGTTATCCTTAAGCTTTAGTTCTTATGCTACTATAACTACTGCGTTCATGGCGGCGTTGGCAGAATGTAAGGCCTCTAGCCAGCAAGAGAAGCAGTTCGGGATTTTAGTTGCCGGACGTGGTTGTATGGCGAAACCCCAAGCCGATGGCGAAGAAAAATTAAAAGGCTTTGACGATGGCCTTAAGCAACGGCTGATCGGGGCTATTGTGGTTGTTATATTGGCCATTATCCTGCTTCCTAAGCTGTTTCGTGGCGAAGGCCAGGAAACACTCGTGCCAACCGTCTTGATACCTCAGCCACCTAAGGCTCCAACGATTCAGCTGCCTGCGCGCCAGTCTCTTGATTCTTTACCTGTCACTGTTCCTAAGCTTGCTCAAGAAGCGGAAAAAGTAGAGCAAGAATCTCAGCAGCCATTTCAGCAACAACCAAGTCCTGATACACCTGTTTCTGCCGAAGTTGCGCCTGTGCCAGAGTCCATCGAGACTGTTTTGGACGAATCAGGAAAAGCGATAGCCTGGACAATCCAAGTGGCGAGCTTCAACGATGATAGTAATGCGTTGAAGCTTCGGGATCGTTTGCAAGAAGCAGGAATGACGGCTTATATTCGCCATCGGCAAATTAGCGACGAGCGGCGAGTGACACGAGTTTATGTCGGACCCATGGCACAACGTGAGAAGCTAAAGCCTGTATTGTCTCGCTTGCAAGACGAGTATCAATTAGCAGGCTTGGTGGTTCGAGGAACGAAAAAGATGTGCGGAATTGTTGGCATTGTCGGAAAAAACCATGTCAATCAAGCGCTTTATGATGCCTTGACGGTGCTCCAGCACAGAGGCCAGGATGCGGCTGGTATTGTTACCTGTCACGACAGTAAATTGTATTTGCGCAAGGACAATGGTTTGGTTCGGGATGTGTTCCGCACGCGGCATATGCAGAGGTTGGTAGGGCATATGGGCATTGGTCACGTTCGCTATCCAACGGCGGGATCATCATCTTCTGCTGAAGCCCAGCCTTTTTACGTGAACTCGCCCTATGGGATTACACTGGCCCACAATGGCAATTTGACGAACACGGAAGAACTTGCTCAAGATTTGTTTCGCGCTGATTTACGCCATATCAATACCAACTCAGATTCAGAGGTTTTGCTGAATGTTTTTGCCCACGAATTGCAAAGGTTGGGTAAGTTAAAACCCTCTTCCGATGATATTTTTACGGCCGTCAGTGGTGTGCATCGTCGAGTCCGAGGCGCCTATGCCGTTGTTGCTATGGTGTCAGGGTATGGGGTTTTAGCATTCCGTGACCCGTTCGGTATTCGCCCTGTAGTCATTGGGGAACGTATTACTGATTCGGGCAAAGAATACATGGTCGCCTCTGAGAGCGTGGCTTTGGACGCGTTAGGTTTCACTTTGCTGAAAGACCTTGAGCCTGGAGAAGCTGTTTTTATCGATGCGAATGGTCAGCTTTTTCAACGCCAGTGTGCGCAGAATCCTACCCTCAACCCTTGTATTTTTGAGCATGTCTATTTTGCCCGTCCAGATTCGATTATGGATGGTATCTCAGTTTATAAGTGCCGCTTGCGTATGGGCGAAAAGCTTGCGGATAAAATTAAGCGGACGTGGTCTGACCATGATATTGATGTTGTCATGCCGATTCCCGATACCAGCCGAACGTCGGCGCTAGAGTTGGCAAACCGTTTAGGGGTGAAGTATCGCGAGGGTTTTATGAAAAATCGGTATATTGGTCGCACCTTTATTATGCCAGGCCAGAGTCAGCGCAAAAAATCTGTCAGACAAAAGCTGAACCCTATTGCGTTAGAATTTCGAAAATGTACTGTTGGTGGATGA

Transcript

ANN35010-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q51342	Amidophosphoribosyltransferase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=purF PE=3 SV=3
P0AG16	Amidophosphoribosyltransferase OS=Escherichia coli (strain K12) OX=83333 GN=purF PE=1 SV=2
P0AG17	Amidophosphoribosyltransferase OS=Shigella flexneri OX=623 GN=purF PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05036 all species →	SPOR	SPOR domain	Domain	Interproscan
PF13522 all species →	GATase_6	Glutamine amidotransferase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036680 all species →	Homologous_superfamily	Sporulation-like domain superfamily	Interproscan
IPR035584 all species →	Domain	Amidophosphoribosyltransferase, N-terminal	Interproscan
IPR017932 all species →	Domain	Glutamine amidotransferase type 2 domain	Interproscan
IPR036565 all species →	Homologous_superfamily	Mur-like, catalytic domain superfamily	Interproscan
IPR036615 all species →	Homologous_superfamily	Mur ligase, C-terminal domain superfamily	Interproscan
IPR005854 all species →	Family	Amidophosphoribosyltransferase	Interproscan
IPR029057 all species →	Homologous_superfamily	Phosphoribosyltransferase-like	Interproscan
IPR029055 all species →	Homologous_superfamily	Nucleophile aminohydrolases, N-terminal	Interproscan
IPR007730 all species →	Domain	Sporulation-like domain	Interproscan
IPR001645 all species →	Family	Folylpolyglutamate synthetase	Interproscan
IPR000836 all species →	Domain	Phosphoribosyltransferase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11907 all species →	AMIDOPHOSPHORIBOSYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042834 all species →	Molecular Function	peptidoglycan binding	Interproscan
GO:0004044 all species →	Molecular Function	amidophosphoribosyltransferase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006164 all species →	Biological Process	purine nucleotide biosynthetic process	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0016881 all species →	Molecular Function	acid-amino acid ligase activity	Interproscan
GO:0009113 all species →	Biological Process	purine nucleobase biosynthetic process	Interproscan
GO:0004326 all species →	Molecular Function	tetrahydrofolylpolyglutamate synthase activity	Interproscan
GO:0009396 all species →	Biological Process	folic acid-containing compound biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35010-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.