Gene detail

Detailed information of ANN35013-RA in Leptoseris scabra

Genomic Location: Scaffold_95__1_contigs__length_60704:34485...35560
NR annotation: WP_092023922.1, 3-isopropylmalate dehydrogenase [Marinobacter zhejiangensis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2SJD6	3-isopropylmalate dehydrogenase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=leuB PE=3 SV=1
Q21IY5	3-isopropylmalate dehydrogenase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=leuB PE=3 SV=1
Q6FEV6	3-isopropylmalate dehydrogenase OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=leuB PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0014809 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00180 all species →	Iso_dh	Isocitrate/isopropylmalate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004429 all species →	Family	Isopropylmalate dehydrogenase	Interproscan
IPR024084 all species →	Domain	Isopropylmalate dehydrogenase-like domain	Interproscan
IPR019818 all species →	Conserved_site	Isocitrate/isopropylmalate dehydrogenase, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42979 all species →	3-ISOPROPYLMALATE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003862 all species →	Molecular Function	3-isopropylmalate dehydrogenase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009098 all species →	Biological Process	L-leucine biosynthetic process	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00052	leuB, IMDH; 3-isopropylmalate dehydrogenase	EC:1.1.1.85	Valine, leucine and isoleucine biosynthesis	ko00290	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.