Genomic Location: Scaffold_95__1_contigs__length_60704:42633...43721
NR annotation: WP_011396299.1, chorismate synthase [Hahella chejuensis]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN35015-RA |
| Transcript |
| ANN35015-RA |
| Protein |
| ANN35015-RA |
| UniProt accession | Description |
|---|---|
| Q2SJE4 | Chorismate synthase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=aroC PE=3 SV=1 |
| A1U0Y3 | Chorismate synthase OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=aroC PE=3 SV=1 |
| Q3J713 | Chorismate synthase OS=Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / JCM 30415 / NCIMB 11848 / C-107) OX=323261 GN=aroC PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0017614 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01264 all species → | Chorismate_synt | Chorismate synthase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035904 all species → | Homologous_superfamily | Chorismate synthase AroC superfamily | Interproscan |
| IPR000453 all species → | Family | Chorismate synthase | Interproscan |
| IPR020541 all species → | Conserved_site | Chorismate synthase, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21085 all species → | CHORISMATE SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004107 all species → | Molecular Function | chorismate synthase activity | Interproscan |
| GO:0009073 all species → | Biological Process | aromatic amino acid family biosynthetic process | Interproscan |
| GO:0005829 all species → | Cellular Component | cytosol | Interproscan |
| GO:0009423 all species → | Biological Process | chorismate biosynthetic process | Interproscan |
| GO:0010181 all species → | Molecular Function | FMN binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01736 | aroC; chorismate synthase | EC:4.2.3.5 | Phenylalanine, tyrosine and tryptophan biosynthesis | ko00400 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
