Gene detail

Detailed information of ANN35024-RA in Leptoseris scabra

Genomic Location: Scaffold_54__1_contigs__length_82578:65571...68057
NR annotation: CAE7313224.1, sdhA [Symbiodinium pilosum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35024-RA

ATGTCTGTTCGTAAATTACAATTCGATGCTATCGTGATCGGTGGCGGTGGCGCAGGGATGAGAGCCTCCCTGCAGATGGCGCGCTCTGGTTATAAAACGGCGGTAATTACAAAAGTTTTTCCCACTCGTTCTCACACGGTTTCTGCTCAAGGTGGTATTACTTGTGCAATTGCCAGTGCTGACCCCAACGACGATTGGCGTTGGCATATGTACGATACCGTAAAAGGTTCTGATTATATCGGTGACCAAGATGCTATCGAATATATGTGTAGCGTCGGCCCTGAAGCTGTCTTTGAGCTAGAGCATATGGGGTTACCTTTTTCTCGCACGGAAACTGGTCGAATTTACCAACGCCCCTTTGGTGGACAATCAAAAGATTTTGGTAAAGGCGGTCAGGCAGCGAGAACCTGTGCAGCAGCAGACCGCACGGGTCACGCTTTGCTGCACACGCTTTACCAAAACAATATGAAAGCGGGCACAGTCTTTTTTAATGAATGGTATGCCACGGATCTCGTCGTTAACCAAGATAAAAAAGTTGTTGGTGTCACAGCCGTCAATATTGAAACTGGTGAAGTCTTCTTTATTGAGTCTAAAGCAACCGTATTTGCCACAGGTGGTGCAGGTCGAATTTACAAATCCACGACGAATGCTCTTATTAATACTGGTGACGGTGTTGGTATGGCTTTACGTGCTGGGTTCCCTGTGCAGGATATCGAAATGTGGCAGTTCCACCCAACCGGAATCGCAGGCGCTGGTGTTCTTGTTACAGAAGGTTGTCGTGGTGAGGGTGGTTACCTGATCAATAAAGATGGCGAGCGTTTCATGGAGCGTTATGCACCCAATGCTAAAGACTTGGCAGGTCGTGACGTTGTAGCTCGTTCAATGGTTAAAGAAATTCTTGAAGGGCGTGGTGCTGGTCCAGAAGCGGATCACGTTTTATTAAAGCTGGATCACCTTGGTGAAGAAGTGCTCAATAGTCGTCTACCAGGTATTATGGAGCTTTCTAAAACCTTTGCTCATGTTGATCCTTCAAAAGAACCTGTTCCTGTCGTACCGACTTGTCACTACATGATGGGTGGTATTCCGACAAACATTCACGGACAGGCACTCACGCAAGATGCCAATGGTAATGATGTTGTTATCGAAGGTTTGTTTGCTTGTGGTGAAGTGGCTTGTGTATCCGTGCATGGCGCTAACCGCTTAGGGGGTAATTCTCTACTTGACCTTGTGGTCTTTGGTCGAGCAGCAGGTTTACATATTGAAAAAGCTCTTGGCGAAGGCATTGAGCAGCGTAATGCTTCTGAATCCGATCTAGAGGCTGCCCTGTCTCGCATGAACCGCTGGAATGAGTCTTCTTCAGGAGAGAGTGTTTCTGCACTTCGTACAGAGTTACAAGACACCATGCAGAACAGTTTCGGTGTATTCCGTACCGAAGAGCATATGTTAACGGGTATTAAGAAGCTGGCGGAGCTTCGCGAGCGTATTGGTCAAGCTCATTTGAGTGATAAGAGCCAAGCCTTTAATACCGCACGTATTGAAGCCCTAGAGCTAGATAACCTCTTAGAAGTGGCTGAAGCAACCGCTATTGCTGCTGAAGAGCGGAAAGAAAGCCGTGGTGCTCATGCGCGAGATGATTACACCGATCGTGATGATGCAACTTGGTTGAAGCATTCAATGTACTTCCCTGGCGAGAAAAAAGTTGGCCAGCGTGAAGTAAACTTTGAACCAAAAACCATGGATGCTTTTGAACCTAAAAGGAGTATGGCCATGAAAGTTAGCATTTATCGCTATAATCCTGAAAAAGATAACGCACCATACATGCAGGATTTTGATATTGAAATTCCTGGTGGAAAAGACATTATGGTGCTGGATTTACTTCAGCTAGTTAAAGACCAGGATCCATCGTTAGTGTACCGTCGCTCTTGCCGTGAAGGTGTTTGTGGCTCCGATGGTATGAATATGAATGGTAAAAATGGCTTGGCATGTATTACGCCATTGTCAGCGGTCGCTAAAAATAATGAAATTATCCTACGCCCTTTACCAGGTTTGCCGGTTATTCGTGACCTGGTTGTGGATATGGCTATTTTCTATAAGCAATATGAGAAAGTTAAGCCATTCTTGATTAACGACTCTCAACCACCGAGTATCGAGCGTCTGCAATCACCAGAAGACCGCGAGAAATTAGATGGACTGTACGAGTGTATCCTTTGTGCTTGTTGTTCTACTTCTTGCCCATCTTTCTGGTGGAATCCTGATAAGTTCGTAGGACCTGCAGGTCTTCTACAAGCCTATCGATTCCTTGCGGATTCTCGTGATACGGCAACCGTTGATCGGCTGGCAGGCTTAGACGATCCATTCAGCGTGTTCCGTTGCCGGGGCATTATGAATTGCGTCAACGTATGTCCAAAAGGTCTAAATCCGACACGCGCTATTGGCCACATAAGGACAATGTTATTGCAGCGTGCCACCTAG

Transcript

ANN35024-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AC43	Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O157:H7 OX=83334 GN=sdhA PE=3 SV=1
P0AC42	Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=sdhA PE=3 SV=1
P0AC41	Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) OX=83333 GN=sdhA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003920 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13534 all species →	Fer4_17	4Fe-4S dicluster domain	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF13085 all species →	Fer2_3	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF02910 all species →	Succ_DH_flav_C	Fumarate reductase flavoprotein C-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030664 all species →	Family	FAD-dependent oxidoreductase SdhA/FrdA/AprA	Interproscan
IPR017900 all species →	Conserved_site	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	Interproscan
IPR003952 all species →	Binding_site	Fumarate reductase/succinate dehydrogenase, FAD-binding site	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR017896 all species →	Domain	4Fe-4S ferredoxin-type, iron-sulphur binding domain	Interproscan
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR025192 all species →	Domain	Succinate dehydogenase/fumarate reductase N-terminal	Interproscan
IPR014006 all species →	Family	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Interproscan
IPR015939 all species →	Domain	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	Interproscan
IPR004489 all species →	Family	Succinate dehydrogenase/fumarate reductase iron-sulphur protein	Interproscan
IPR027477 all species →	Homologous_superfamily	Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily	Interproscan
IPR011281 all species →	Family	Succinate dehydrogenase, flavoprotein subunit	Interproscan
IPR009051 all species →	Homologous_superfamily	Alpha-helical ferredoxin	Interproscan
IPR037099 all species →	Homologous_superfamily	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11632 all species →	SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000104 all species →	Molecular Function	succinate dehydrogenase activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0009061 all species →	Biological Process	anaerobic respiration	Interproscan
GO:0045282 all species →	Cellular Component	obsolete plasma membrane succinate dehydrogenase complex	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0022900 all species →	Biological Process	electron transport chain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00239	sdhA, frdA; succinate dehydrogenase flavoprotein subunit	EC:1.3.5.1	Legionellosis	ko05134	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.