Gene detail

Detailed information of ANN35039-RA in Leptoseris scabra

Genomic Location: Scaffold_62__1_contigs__length_76242:61624...63234
NR annotation: WP_198423066.1, DEAD/DEAH box helicase [Tepiditoga spiralis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
Q58083	Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ0669 PE=1 SV=1
Q5L3G9	DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus kaustophilus (strain HTA426) OX=235909 GN=cshA PE=3 SV=1
Q8Y8N0	ATP-dependent RNA helicase CshA OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) OX=169963 GN=cshA PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF03880	DbpA	DbpA RNA binding domain	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR005580	Domain	DEAD box helicase DbpA/CsdA, RNA-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR050547	Family	DEAD box ATP-dependent RNA helicases	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47963	DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K05592	deaD, cshA; ATP-dependent RNA helicase DeaD	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala