Gene detail

Detailed information of ANN35049-RA in Leptoseris scabra

Genomic Location: Scaffold_369__1_contigs__length_39488:22858...23286
NR annotation: MAC48002.1, 50S ribosomal protein L11 [Oceanospirillum sp.]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2S901	Large ribosomal subunit protein uL11 OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=rplK PE=3 SV=1
C5BPQ2	Large ribosomal subunit protein uL11 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=rplK PE=3 SV=1
B3PK26	Large ribosomal subunit protein uL11 OS=Cellvibrio japonicus (strain Ueda107) OX=498211 GN=rplK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004091 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00298 all species →	Ribosomal_L11	Ribosomal protein L11, RNA binding domain	Domain	Interproscan
PF03946 all species →	Ribosomal_L11_N	Ribosomal protein L11, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036796 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, N-terminal domain superfamily	Interproscan
IPR006519 all species →	Family	Large ribosomal subunit protein uL11, bacterial-type	Interproscan
IPR000911 all species →	Family	Ribosomal protein uL11	Interproscan
IPR020783 all species →	Domain	Large ribosomal subunit protein uL11, C-terminal	Interproscan
IPR036769 all species →	Homologous_superfamily	Large ribosomal subunit protein uL11, C-terminal domain superfamily	Interproscan
IPR020785 all species →	Conserved_site	Large ribosomal subunit protein uL11, conserved site	Interproscan
IPR020784 all species →	Domain	Large ribosomal subunit protein uL11, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11661 all species →	60S RIBOSOMAL PROTEIN L12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0070180 all species →	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02867	RP-L11, MRPL11, rplK; large subunit ribosomal protein L11	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.