Gene detail

Detailed information of ANN35050-RA in Leptoseris scabra

Genomic Location: Scaffold_369__1_contigs__length_39488:29589...34314
NR annotation: MAD45515.1, DNA-directed RNA polymerase subunit beta' [Oceanospirillaceae bacterium]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35050-RA

ATGAAAGACTTATTAAATCTGTTAAAAGCGCAGGGCCAGACAGAAGAATTTGATTCGATCCGTATCGGTTTGGCTTCTCCGGATATGATTCGTTCATGGTCGTTTGGTGAAGTGAAAAAGCCTGAAACGATCAACTACCGTACCTTTAAACCAGAGCGTGATGGTTTATTCTGTGCGCGTATTTTTGGTCCCATTAAGGACTACGAGTGCTTGTGTGGAAAATATAAGCGTCTAAAGCACCGTGGTGTGATTTGTGAAAAGTGTGGCGTAGAAGTTACCCAGGCTAAAGTGCGACGTGATCGCATGGGGCATATCGAGCTCGCTAGCCCGGTAGCCCATATTTGGTTTCTAAAATCTTTGCCATCTCGTATTGGTTTGTTACTCGACATGACCTTGCGAGACATTGAGCGCGTACTTTATTTTGAATCATTTGTTGTTATTGAGCCTGGTATGACAACCCTTGAAAAAGGGCAGTTGCTCAACGACGAACAATATTACGAAGCTCTTGAAGAATTTGGTGATGATTTCGATGCGCGTATGGGTGCCGAAGCGGTGCAAGCCCTTCTGAAAGGAATGGATCTTGATGCAGAAGCGGCAACTATTCGTGAAGAGATTCCTGAGACGAATTCTGAAACCAAAATCAAAAAATTCTCTAAGCGCTTGAAGCTGATTGAGGCGTTCATAAAATCAGGCAACCATCCTGGTTGGATGATTCTTGATGTTCTACCGGTATTGCCACCCGATTTACGTCCGTTGGTTCCTCTAGATGGTGGACGTTTTGCGACTTCCGACCTTAACGACCTTTACCGCCGTGTGATCAACAGGAATAACCGCCTTAAGCGTCTTCTTGATCTCAGTGCGCCAGACATTATTGTTCGTAACGAAAAGCGTATGCTGCAAGAGTCAGTCGATGCGCTTCTCGATAATGGCCGCCGTGGTCGTGCTATCACAGGTTCAAACAAGCGTCCTTTGAAATCCCTTGCTGACATGATTAAAGGTAAGCAAGGTCGTTTCCGTCAAAACCTTTTAGGTAAGCGGGTTGATTACTCGGGCCGTTCGGTAATCGTTGTAGGGCCTCGGCTGAGACTACATCAATGTGGTCTTCCTAAGAAAATGGCCTTGGAGCTGTTTAAGCCTTTCATTTTTAGCAAGTTAGAACTGCGCGGTTTAGCGACAACGATTAAAGCCGCCAAGAAAATGGTCGAGCGCGAGACTGCAGAAGTATGGGATATCCTCGCTGAAGTTATTCGTGAGCATCCCGTTCTACTGAACAGGGCGCCTACACTCCACCGTTTGGGTATTCAAGCTTTTGAACCAACCCTTATTGAAGGTAAAGCGATCCAGCTACACCCTCTAGTCTGTGCTGCTTATAACGCTGACTTTGACGGTGACCAAATGGCTGTCCACGTGCCTCTAACTCTCGAGGCTCAGCTAGAAGCACGCGCGCTAATGATGTCCACCAATAACATCCTATCACCTGCTAACGGCGAGCCGATTATTGTACCTTCTCAGGATGTGGTCTTGGGTCTTTACTATATGACTCGCGAGCGCGTTAATGATGTGGGTGAAGGCATGATTTTCTCTGACATTCATGAAGTGCATCGTGCCTATGGTTCTGGTCAAGTCGGTCTGCAAGCGCGTATTAAAGTGCGTATCAATGAAGTTGAAATCACCGCTGAAGGTGACAGAAACGAGCGTACTAGCGTCGTAGAAACAACGACAGGTCGAGCGCTGCTTTTCGAAATTATTCCCGCTGGCTTGCCTTTCTCATTGGTTAATCAACCCATGAAGAAGAAAGCCATTTCTCGCTTGATCAATGCTTGTTACCGTCGTGTTGGTTTAAAAGAGTCGGTTATCTTTGCTGATCAGTTGATGTATACAGGTTTTGAGTATGCGACTCGCAGTGGTGCGTCCATTGGTGTTAACGACTTTGTTATTCCGGATGAAAAGGGCGGTATTATCGCTGACTCCGAAAATGAAGTGCGTGAGATCGAAAGCCAGTACGCTTCAGGTCTTGTAACTCAAGGTGAGAAGTACAACAAGGTTGTTGATATTTGGTCTCGCGCCAATGACATGGTTGCCAAGTCCATGATGGACACCTTGGGTAAAGAAAAAGTCGTCAACAAAAAAGGCGAAGAAGAAGAGCAAGAATCCTTTAACTCCGTTTATATTTACGCAGATTCTGGAGCGCGGGGTTCCCCAGCACAGATTCGTCAGCTAGCGGGTATGCGTGGTCTGATGGCGAAACCTGATGGCTCCATTATTGAGACGCCAATTACGGCAAACTTCCGTGAAGGGCTCTCGGTATTGCAGTACTTTATTTCTACCCACGGTGCGCGGAAAGGTCTTGCCGATACTGCCTTGAAAACGGCGAACTCGGGTTACTTAACACGACGTTTGGTGGATGTGGCCCAAGACTTAGTGGTTACCGAGTACGACTGTGGAACCACTAACGGCCTAGTTGTCGCGCCATTAATTGAAGGTGGTGACGTTGTTGTTCCGCTAGGTACTCGTGTGTTGGGTCGTGTTGTTGCCCAAGACGTTAAAATGCCTAGCGATCCAGAGAAAATCGCCATCGAAGCTGGCACTCTCATCGACGAAGCCTGGGTTGATCGTTTAGAAGTCATGGGTGTTGATGAGATGGTGGTTCGCTCTGCCATTACCTGTGATGTGCGTTATGGTATTTGCTCCAAGTGTTATGGCCGTGACTTGGGTCGTGGGCATTTGGTTAATGATGGTGAAGCTGTTGGTGTTATTGCTGCCCAATCTATCGGTGAGCCTGGAACCCAGTTAACCATGCGTACCTTCCACATTGGTGGTGCGGCATCACGGGCCACGGCTGTTGATAATATTCAGGTTAAAAACGCGGGTGTTGCGCGTTTACATAATTTGAAAACTGTGCAGCGTACAAGTGGTGATCTGGTTGCTGTTTCTCGATCTGGTGCTCTGGCAGTTGCTGATGACCATGGTCGTGAACGTGAGCACTATAAGCTACCCTACGGCGCAGTCATTAAAGTTAAAGATGGTTCTCCAGTGTCTGCTGGTGAAACCGTGGCTAACTGGGATCCGCATACCCATCCCATCGTTTCTGAAGTTCGCGGTAAAGTGGCTTTTGTGGGTATGGAAGATGGTATTTCTGTGCGTCGCCAAGTGGATGAAGTGACAGGTATTTCCAACATCCAGGTCATTGATCCAAAAGATCGTCCAGCTGCGGGTAAAGACCTGCGTCCTATGGTCAAGCTGATCAATGAAGATGGCAGTGATGTCTGTATGCCGAATACAGATGTGCCAGCACAGTACTTGCTACCAGCGAACGCCTTGTTAAGTATTGAAGATGCTTCTGTTATCGACATTGGTGAAACCATTGCTCGTATTCCACAAGAAGTCTCGAAAACCAAGGACATCACGGGTGGTCTGCCACGGGTTGCTGATCTCTTTGAAGCGCGTAAGCCAAAAGAGCCTGCTATCCTTGCGGAAATTACAGGTACAGTGAGCTTTGGTAAGGAAACCAAAGGCAAGAAGCGTTTGGTCATTACGCCGCACGATGGTTCTGATACTTATGAAGAGTTGATTCCAAAGTGGCGTCACCTCAACGTCTTCGAAGGTGAGCAAGTTGAGAAGGGTGAGGTTATCTCTGATGGCCCGCTCAATCCTCATGATATTTTACGCTTGTTAGGTATCAGTGAGCTTGCTAAGTACATCACTAACGAAATTCAAGAAGTTTATCGTCTGCAAGGTGTTGTGATTAACGATAAACACATTGAAGTCATCGTTCGCCAGATGTTGCGTAAAGTGGAGATCTCGGACCCAGGTGATACAGATCTGATTCGTGGAGATCAAGTGGAATACACGGCTGTTCTTGAAGCTAATGATTCCATTGAAGGCCAGGATAAATTGCGCGCCACGTATGAACGGATTCTTTTAGGTATTACCAAAGCTTCTTTGGCAACGGATTCCTTCATTTCGGCTGCGTCCTTCCAAGAAACAACTCGTGTTCTTACAGAAGGTGCCGTTACGGGCAAGCGCGATTACTTACGTGGTTTGAAAGAGAATGTGGTGGTGGGGCGTTTGATTCCTGCGGGAACAGGTTCTACCTATCACAATGAGCGTCGCCGCCATCGTGAAGCTGCAAAACCAGAGAGTGCTCAAGGAAGTCCTGCAGAAACAACATATTTCGGAGAAAGCGAAACAATGTCAACAATCAACCAATTGGTACGTAAGCCGCGCAAAGTCAAGGCGGCAAAGAGTGACGTACCCGCCCTGCAGGCTTGCCCGCAGCGTCGTGGTGTCTGCACTCGCGTGTATACGACAACACCGAAGAAGCCAAATTCTGCGCTTCGTAAAGTGTGCCGTGTGCGTTTAACGAACGGCTATGAAGTGACTTCCTACATTGGTGGTGAAGGTCATAACCTACAAGAGCATAGCGTTGTGCTTATTCGTGGTGGCCGGGTAAAAGATCTGCCAGGTGTGCGTTATCACACCGTGCGTGGTGCTCTAGATACGTCTGGAGTTTCTGATCGTAAGCAAGGCCGATCTAAATACGGTGCTAAACGACCTAAGTAA

Transcript

ANN35050-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6UZI2	DNA-directed RNA polymerase subunit beta' OS=Pseudomonas paraeruginosa (strain DSM 24068 / PA7) OX=381754 GN=rpoC PE=3 SV=1
Q02T86	DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=rpoC PE=3 SV=1
Q9HWC9	DNA-directed RNA polymerase subunit beta' OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rpoC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010783 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04983 all species →	RNA_pol_Rpb1_3	RNA polymerase Rpb1, domain 3	Domain	Interproscan
PF00623 all species →	RNA_pol_Rpb1_2	RNA polymerase Rpb1, domain 2	Domain	Interproscan
PF04998 all species →	RNA_pol_Rpb1_5	RNA polymerase Rpb1, domain 5	Domain	Interproscan
PF04997 all species →	RNA_pol_Rpb1_1	RNA polymerase Rpb1, domain 1	Domain	Interproscan
PF05000 all species →	RNA_pol_Rpb1_4	RNA polymerase Rpb1, domain 4	Domain	Interproscan
PF00164 all species →	Ribosom_S12_S23	Ribosomal protein S12/S23	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007066 all species →	Domain	RNA polymerase Rpb1, domain 3	Interproscan
IPR006032 all species →	Family	Small ribosomal subunit protein uS12	Interproscan
IPR000722 all species →	Domain	RNA polymerase, alpha subunit	Interproscan
IPR012754 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime, bacterial type	Interproscan
IPR042102 all species →	Homologous_superfamily	RNA polymerase Rpb1, domain 3 superfamily	Interproscan
IPR045867 all species →	Family	DNA-directed RNA polymerase, subunit beta-prime	Interproscan
IPR038120 all species →	Homologous_superfamily	RNA polymerase Rpb1, funnel domain superfamily	Interproscan
IPR044893 all species →	Homologous_superfamily	RNA polymerase Rpb1, clamp domain superfamily	Interproscan
IPR005679 all species →	Family	Ribosomal protein uS12, bacterial-type	Interproscan
IPR006592 all species →	Domain	RNA polymerase, N-terminal	Interproscan
IPR007081 all species →	Domain	RNA polymerase Rpb1, domain 5	Interproscan
IPR007080 all species →	Domain	RNA polymerase Rpb1, domain 1	Interproscan
IPR007083 all species →	Domain	RNA polymerase Rpb1, domain 4	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19376 all species →	DNA-DIRECTED RNA POLYMERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015935 all species →	Cellular Component	small ribosomal subunit	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03046	rpoC; DNA-directed RNA polymerase subunit beta'	EC:2.7.7.6	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.