Gene detail

Detailed information of ANN35056-RA in Leptoseris scabra

Genomic Location: Scaffold_218__1_contigs__length_43989:3046...5569
NR annotation: CAB3504939.1, unnamed protein product [Digitaria exilis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35056-RA

ATGAAGTTACCGATTTATTTAGATTACGCAGCAACCACGCCTGTTGATGAACGTGTGGCAAAAGAAATGATGCAATGCCTGACTATGGACGGTAATTTTGGTAACCCTGCATCACGCTCACACCGTTTTGGTTGGCAAGCAGAAGAAGCAGTTGATCAAGCGCGTACAGATATTGCTGATCTGATCAACGCTGACCCGCGTGAAATTGTTTTCACTTCAGGTGCTACAGAATCAAACAACCTAGCAATTAAAGGTGCTGCGCAGTTCTATAAAAAGAAAGGCAAGCACGTTATCACTGTTAAAACAGAGCACAAAGCAGTGCTTGATACGTGTCGTGAACTAGAGCGTCAAGGTTTCGAAGTAACCTATATGGACGTTGAAGAAAACGGTTTACTTGACCTTAAAAAGCTTGAAGCTGCAATGCGTGACGACACAGTACTTGTGAGCGTAATGCACGTAAATAACGAGCTAGGTGTTATCCAAGATATCGCGACAATCGGCGAAATGTGCCGTGAGCGCAAAATTATGTTCCACGTAGATGCTGCACAAAGCGCAGGTAAAGTACTTATCGACGTGCAACAGTTAAAAGTAGATTTCATGTCGTTCTCTGGCCACAAAGTATATGGCCCGAAAGGTGTAGGCGCACTTTATGTTCGTCGTAAGCCTCGCGCACGTTTAGAAGCGCAAATGCACGGTGGTGGTCATGAGCGTGGTATGCGTTCAGGCACACTAGCTACTCACCAATTAGTTGGTATGGGTGCGGCATTTAGAATCGCTAAAGAAGATTTCGAAAAAGACCATGCACACATCAGCGCACTTCGTAAGCGCCTGATCGATGGCATCATGGCTGATATGGACGAAGTTTACTTCAATGGTGAACCAAGTCACTCAGTTCCAGGTATTGTAAATATCAGCTTCAACTTTGTTGAAGGTGAGTCGTTATTAATGGCTGTTAAAGACATTGCTGTTTCATCAGGTTCAGCCTGTACCTCAGCAAGCTTAGAGCCTTCTTATGTACTACGTGCATTAGGCCGTAATGACGAGTTGGCACACAGCTCAATTCGTTTCAGCATTGGCCGCTTTACGACTGAAGAAGAGATTGATTACACCGTTGAACTAATCAAAAACTCGATCGGCCGTTTACGTGAGATGTCTCCTCTTTGGGAAATGCATCAAGAAGGTAGTGAGGATAGTATTATGGCTTATAGTGATAAAGTAATCGATCATGTTGAAAATCCACGTAACGTGGGTGCTTTAGACAAAAATGATCCGTCAGTTGCAACAGGTATGGTGGGTGCACCAGCATGTGGTGACGTAATGAAATTGCAAATCAAAGTATCACCAGAAGGTGTAATTGAAGACGCAAAATTCAAAACATATGGTTGTGGTAGCGCAATTGCTTCTTCTTCACTTGTAACTGAGTGGGTAAAAGGCAAAACATTAGATGAAGCTGCAACAATCAAAAACACTGATATCAGTGCTGAGCTTGAATTACCGCCAGTGAAAATTCACTGTTCAATTTTAGCAGAAGACGCGATTCAAGCAGCAATTGCTGACTACAAAAGCAAACAAGCGAACCGTGGTGTGAAAGTAATCGTTGATGCTAAAAGCTTAGTCTACATTGATGGTACTGAGCTTGATTACACCAAAGAAGCGACTATTAATAAACACTACCTTGAGCTGCAACGCGCAGTTCACCCTGATCGCCACGCAAGCTCTAGCAGCCGTGACAAATTACTTGCTGTGCAAAATGCAGCAGAAATCAATGATGCATTACAAACTTTAAAACACCCGGTAAAACGTGCTGAGTACATGCTAAGCGAGCTTGGTGTTGATATTCGCGCCGAGCAACAAACATTACAAGATCCGCTATTCTTAATGCAGCAAATGGAGCTACGTGAAGAATTAGAAGAACTTGAAAATGCCGCAGATCCTGATGCAGCAATTGCCCAGTTTGAAGCGCAAATTAAACAGCTCGATAAACAATACAGCAGTGAATTAGCCGCTCAGCTCGCAAGTAATGATGAGCAACAATGGCAAGCTGCTGCTGACAATATTCGTAATTGA

Transcript

ANN35056-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3IFI3	Cysteine desulfurase IscS OS=Pseudoalteromonas translucida (strain TAC 125) OX=326442 GN=iscS PE=3 SV=1
A4WDB1	Cysteine desulfurase IscS OS=Enterobacter sp. (strain 638) OX=399742 GN=iscS PE=3 SV=1
B5XNJ7	Cysteine desulfurase IscS OS=Klebsiella pneumoniae (strain 342) OX=507522 GN=iscS PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003277 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00266 all species →	Aminotran_5	Aminotransferase class-V	Domain	Interproscan
PF01592 all species →	NifU_N	NifU-like N terminal domain	Family	Interproscan
PF07743 all species →	HSCB_C	HSCB C-terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010240 all species →	Family	Cysteine desulfurase IscS	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR000192 all species →	Domain	Aminotransferase class V domain	Interproscan
IPR002871 all species →	Domain	NIF system FeS cluster assembly, NifU, N-terminal	Interproscan
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR004640 all species →	Family	Co-chaperone Hsc20	Interproscan
IPR036386 all species →	Homologous_superfamily	HscB, C-terminal domain superfamily	Interproscan
IPR011339 all species →	Family	Iron-sulfur cluster assembly scaffold protein IscU	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR020578 all species →	Binding_site	Aminotransferase class-V, pyridoxal-phosphate binding site	Interproscan
IPR009073 all species →	Domain	Co-chaperone HscB, C-terminal oligomerisation domain	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11601 all species →	CYSTEINE DESULFURYLASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan
GO:0031071 all species →	Molecular Function	cysteine desulfurase activity	Interproscan
GO:0044571 all species →	Biological Process	[2Fe-2S] cluster assembly	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0051259 all species →	Biological Process	protein complex oligomerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04487	iscS, NFS1; cysteine desulfurase	EC:2.8.1.7	Prokaryotic defense system	ko02048	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.