Gene detail

Detailed information of ANN35058-RA in Leptoseris scabra

Genomic Location: Scaffold_218__1_contigs__length_43989:7550...9651
NR annotation: WP_138602366.1, MULTISPECIES: NAD-dependent succinate-semialdehyde dehydrogenase [unclassified Pseudoalteromonas]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q88RC0	Glutarate-semialdehyde dehydrogenase OS=Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) OX=160488 GN=davD PE=3 SV=1
Q9SAK4	Succinate-semialdehyde dehydrogenase, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ALDH5F1 PE=1 SV=2
P0DOV9	3-sulfolactaldehyde dehydrogenase OS=Pseudomonas putida OX=303 GN=PpSQ1_00395 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000397 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR018298 all species →	Binding_site	Adrenodoxin, iron-sulphur binding site	Interproscan
IPR001055 all species →	Family	Adrenodoxin-like	Interproscan
IPR016160 all species →	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR050740 all species →	Family	Aldehyde Dehydrogenase Superfamily	Interproscan
IPR011536 all species →	Family	Ferredoxin 2Fe-2S type, proteobacteria	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43353 all species →	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0140647 all species →	Biological Process	P450-containing electron transport chain	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0004777 all species →	Molecular Function	succinate-semialdehyde dehydrogenase (NAD+) activity	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0009450 all species →	Biological Process	gamma-aminobutyric acid catabolic process	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00135	gabD; succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase	EC:1.2.1.16 EC:1.2.1.79 EC:1.2.1.20	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.