Gene detail

Detailed information of ANN35061-RA in Leptoseris scabra

Genomic Location: Scaffold_364__1_contigs__length_39544:1635...3336
NR annotation: WP_020582350.1, type IV-A pilus assembly ATPase PilB [Endozoicomonas elysicola]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22608	Type IV pilus assembly ATPase PilB OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=pilB PE=1 SV=2
P45792	Type IV pilus assembly protein TapB OS=Aeromonas hydrophila OX=644 GN=tapB PE=3 SV=1
Q6FF45	Type IV pilus assembly ATPase PilB OS=Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1) OX=62977 GN=pilB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011531 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00437 all species →	T2SSE	Type II/IV secretion system protein	Family	Interproscan
PF05157 all species →	MshEN	MshEN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037257 all species →	Homologous_superfamily	Type II secretion system protein GspE, N-terminal superfamily	Interproscan
IPR013374 all species →	Family	ATPase, type IV, pilus assembly, PilB	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001482 all species →	Domain	Type II/IV secretion system domain	Interproscan
IPR007831 all species →	Domain	Type II secretion system protein GspE, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30258 all species →	TYPE II SECRETION SYSTEM PROTEIN GSPE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009297 all species →	Biological Process	pilus assembly	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02652	pilB; type IV pilus assembly protein PilB	-	Bacterial motility proteins	ko02035	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.