Gene detail

Detailed information of ANN35062-RA in Leptoseris scabra

Genomic Location: Scaffold_364__1_contigs__length_39544:3347...5727
NR annotation: WP_257286473.1, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA [Endozoicomonas sp. SESOKO1]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35062-RA

ATGGCAGAGCTGGTTCCTATCCTGTTGGTGTTGGTGCGTGAGGCAAGGGCAGGGGATGTGGCCATTAATCTGGATGCTGAAGAGCAAGATCGCCATGAGTTGATGCTGAGTGTGTTTGAGCAGGTTTACCGGCATCCGGACTGCCAAGGCTGGGGCAAGCTTGGTTTGGTGATTCAGGCCTATGGCAAACGGGCCCTGCCGTCACTGTGCTGGCTTTCGGCCCTGGCCCGGGAGCAGGGTGATGTGATCCCGGTGCGCCTGGTCAAAGGTGCCTACTGGGACAGTGAGATCAAACACTGCCAACAGCTGGGGTTACCCGGTTATCCAGTCTATACCCGCAAGGAGTCTACCGATATTGCTTATCTGGTCTGCGCTAAGTATCTCCAGTCCGTGCCAGGTTTGCTCTATCCGCAGTTCGCCAGCCATAACGCCCATACGATTGCCAGTATCCTGACCATGGCAGGGCTGGGCACCACCGGCACCGGCTCTGAGTCGGCCAATGATTTTGAGTTCCAGCGTCTGCACGGCATGGGGGATGGCCTTTATCATCAGGTGCTGACACAGTACCGTCTGCCGTTGCGGATATACGCCCCAGTGGGCAGCCATCAGGATTTATTGCCCTATCTGGTGCGTCGTTTGCTGGAAAATGGCGCCAACTCCTCGTTTGTCCACCGGCTGCTCGATGCCCGTACGCCCATTTCAGTGCTGGTACAGCATCCGGTGGCCACTTTGGGCAGCCGGGCCAGCGTCCCCCATGAGCAGATTCCATTGCCAACGGATATCTTCGGTCCGAAGCGGCGGAACTCCCAAGGCATCAATGTGGCAGTGGACAGTCAGTGGCAACCGTTTTGTCAGCAGGTTCAGCATTTTTTCGATCACCGCTGGCAGCAGGGATCGTGGCTTGATGGCGAGAAAATTCAGGCCGGTGAAACTATCGTCGTCACCAGCCCTCACGACCGGTCTCATACCGTCGGAGAGATTAACTACGCCAGTGAAGATTTGGTGGAAAAGGCCATCGACGTTGCTGACGCTGCCTTTGAGCAGTGGCGTACGACGCCTGTTTCCCACCGGGCACAGTGTCTGGAAAAACTGGCCGACCTGCTTGAAGAACACCGACCTGAACTGATAGCGCTGTGCCATCTTGAAGCGGGCAAAACCGTTCAGGACGCCATTGATGAGGTGCGTGAGGCGGTGGACTTTTGTCGCTACTATGCCGTGGCTGCTCAGGAGATCTTTTCTGTCCCGCAGTGTCTGCCAGGCCCAACCGGTGAAAGCAATGAGTTGCGACTGACTGGACGAGGCGTTTTTCTCTGCATCAGCCCCTGGAATTTTCCTCTGGCCATTTTCCTTGGCCAGGTGACAGCGGCACTGGTGGCCGGTAATGCTGTAATTGCCAAACCGGCAGAGCAGACCAGCCTGATTGCCGGCCGTGCAGTGGAGTTGATGCTGGCCGCCGGTTTCCCAAGTGGTGTGATTCAGTTGCTGGTCGGTAGCGGAGCCACTATTGGTGAGCAGCTGGTTGTCAGCAACCGGATAGCTGGGGTTGCCTTTACCGGCTCCACCGGGACAGCCCGTAAGATTAATCACGATCTGGCCCACCGCCCGGGACCTATTGTGCCGCTGGTTGCCGAAACCGGTGGCCAGAATGCCATGATTGTCGATTCCACCGCCTTGCCAGAGCAGGTAGTAAAAGATGTGATGCTCTCAGCCTTTGGCAGCGCTGGCCAGCGTTGTTCGGCCTTGAGAGTGCTTTACCTTCAGGAGGATATCGCTGAGCGGGTGATTACTCTGTTGTGCGGCGCAATGGAGACATTGTCGATTGGTGACCCAGGTTTGCTTGCCACGGATATTGGCCCGGTGATTGACGCACGGGCGCATCAGGCGCTGGCAGCACATATCGAACGGATGAAAAAAGAGGCCAGGTTGCTGCTTGAGCAGGAGCATTTTGGCCCAGTGCTCCATGTTATTCGCTATGGCGCCAAAGCATTGCCGGACGTGATCGACCAGATCAATAGCACCGGCTTTGGCCTGACGCTGGGTATCCATAGCCGCAATGAAGCGACGGCGGATTATATCGAACAGCGGGTAAAGGTTGGCAATATTTACATTAATCGCAACCAGACCGGAGCTGTGGTCGGCGCTCAGCCTTTTGGCGGTCAGGGGCTTTCCGGTACTGGCCCAAAAGCAGGCGGCCCCAACTACCTGTTGCGTTTTGCCACGGAGCGGACAGTGTCGGTCAATACCACAGCCGTGGGCGGGAACACTACCTTGTTGTCGCTAAGCGGGGAGGCGTCATGGTGA

Transcript

ANN35062-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O52485	Bifunctional protein PutA OS=Klebsiella aerogenes OX=548 GN=putA PE=3 SV=1
P10503	Bifunctional protein PutA OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=putA PE=2 SV=4
P09546	Bifunctional protein PutA OS=Escherichia coli (strain K12) OX=83333 GN=putA PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004612 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01619 all species →	Pro_dh	Proline dehydrogenase	Family	Interproscan
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR005933 all species →	Domain	Bifunctional protein PutA, C-terminal domain	Interproscan
IPR016160 all species →	Conserved_site	Aldehyde dehydrogenase, cysteine active site	Interproscan
IPR002872 all species →	Domain	Proline dehydrogenase domain	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan
IPR050485 all species →	Family	Proline metabolism enzyme	Interproscan
IPR029041 all species →	Homologous_superfamily	FAD-linked oxidoreductase-like	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR025703 all species →	Family	Bifunctional protein PutA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42862 all species →	DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0003842 all species →	Molecular Function	1-pyrroline-5-carboxylate dehydrogenase activity	Interproscan
GO:0006561 all species →	Biological Process	proline biosynthetic process	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0009898 all species →	Cellular Component	cytoplasmic side of plasma membrane	Interproscan
GO:0010133 all species →	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0004657 all species →	Molecular Function	proline dehydrogenase activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13821	putA; RHH-type transcriptional regulator, proline utilization regulon repressor / proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase	EC:1.5.5.2 EC:1.2.1.88	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.