Gene detail

Detailed information of ANN35068-RA in Leptoseris scabra

Genomic Location: Scaffold_364__1_contigs__length_39544:32526...34019
NR annotation: MBO9482741.1, transcription termination/antitermination protein NusA [Salinisphaera sp. G21_0]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0AFF8	Transcription termination/antitermination protein NusA OS=Escherichia coli O157:H7 OX=83334 GN=nusA PE=3 SV=1
P0AFF7	Transcription termination/antitermination protein NusA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=nusA PE=3 SV=1
P0AFF6	Transcription termination/antitermination protein NusA OS=Escherichia coli (strain K12) OX=83333 GN=nusA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012903 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08529 all species →	NusA_N	NusA N-terminal domain	Domain	Interproscan
PF13184 all species →	KH_5	NusA-like KH domain	Domain	Interproscan
PF14520 all species →	HHH_5	Helix-hairpin-helix domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR030842 all species →	Family	Transcription termination/antitermination protein NusA, bacterial	Interproscan
IPR009019 all species →	Homologous_superfamily	K homology domain superfamily, prokaryotic type	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR010995 all species →	Homologous_superfamily	DNA repair Rad51/transcription factor NusA, alpha-helical	Interproscan
IPR010214 all species →	Repeat	Transcription termination factor NusA, C-terminal duplication	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036555 all species →	Homologous_superfamily	NusA, N-terminal domain superfamily	Interproscan
IPR010213 all species →	Domain	Transcription termination factor NusA	Interproscan
IPR013735 all species →	Domain	Transcription factor NusA, N-terminal	Interproscan
IPR025249 all species →	Domain	KH domain, NusA-like	Interproscan
IPR015946 all species →	Homologous_superfamily	K homology domain-like, alpha/beta	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22648 all species →	TRANSCRIPTION TERMINATION FACTOR NUSA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006353 all species →	Biological Process	DNA-templated transcription termination	Interproscan
GO:0031564 all species →	Biological Process	transcription antitermination	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0031554 all species →	Biological Process	regulation of termination of DNA-templated transcription	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02600	nusA; transcription termination/antitermination protein NusA	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.