Gene detail

Detailed information of ANN35071-RA in Leptoseris scabra

Genomic Location: Scaffold_82__1_contigs__length_66967:35327...35746
NR annotation: WP_017443979.1, alkyl hydroperoxide reductase subunit C [Gayadomonas joobiniege]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0A252	Alkyl hydroperoxide reductase C OS=Salmonella typhi OX=90370 GN=ahpC PE=3 SV=2
P0A251	Alkyl hydroperoxide reductase C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=ahpC PE=1 SV=2
P0AE10	Alkyl hydroperoxide reductase C OS=Escherichia coli O157:H7 OX=83334 GN=ahpC PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001467 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00578 all species →	AhpC-TSA	AhpC/TSA family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024706 all species →	Family	Peroxiredoxin, AhpC-type	Interproscan
IPR000866 all species →	Domain	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR050217 all species →	Family	Thiol-specific antioxidant peroxiredoxin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10681 all species →	THIOREDOXIN PEROXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016209 all species →	Molecular Function	antioxidant activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0008379 all species →	Molecular Function	thioredoxin peroxidase activity	Interproscan
GO:0033554 all species →	Biological Process	cellular response to stress	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24119	ahpC; NADH-dependent peroxiredoxin subunit C	EC:1.11.1.26	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.