Detailed information of ANN35080-RA in Leptoseris scabra

Genomic Location: Scaffold_862__1_contigs__length_32107:13923...15972
NR annotation: VEN35985.1, unnamed protein product [Callosobruchus maculatus]
Species abbreviation LSCAB · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C6DBH3Histidine--tRNA ligase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) OX=561230 GN=hisS PE=3 SV=1
Q6D277Histidine--tRNA ligase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=hisS PE=3 SV=1
Q5QYB0Histidine--tRNA ligase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=hisS PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0017424 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13393
all species →		tRNA-synt_HisHistidyl-tRNA synthetaseDomainInterproscan
PF09976
all species →		TPR_21Tetratricopeptide repeat-like domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015807
all species →		FamilyHistidine-tRNA ligaseInterproscan
IPR045864
all species →		Homologous_superfamilyClass II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)Interproscan
IPR011990
all species →		Homologous_superfamilyTetratricopeptide-like helical domain superfamilyInterproscan
IPR019734
all species →		RepeatTetratricopeptide repeatInterproscan
IPR041715
all species →		DomainClass II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domainInterproscan
IPR004516
all species →		FamilyHistidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunitInterproscan
IPR006195
all species →		DomainAminoacyl-tRNA synthetase, class IIInterproscan
IPR036621
all species →		Homologous_superfamilyAnticodon-binding domain superfamilyInterproscan
IPR018704
all species →		DomainTetratricopeptide repeat-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR43707
all species →		HISTIDYL-TRNA SYNTHETASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004821
all species →		Molecular Functionhistidine-tRNA ligase activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0006427
all species →		Biological Processhistidyl-tRNA aminoacylationInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN35080-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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