Gene detail

Detailed information of ANN35082-RA in Leptoseris scabra

Genomic Location: Scaffold_862__1_contigs__length_32107:25872...28081
NR annotation: KAF1852798.1, hypothetical protein Lal_00008960 [Lupinus albus]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35082-RA

ATGGCGTTATTGCAAATATCCGAGCCTGGAGCTAGCCCGGCTCCTCATCAGAGGAAAATTGCGGTTGGTATTGATTTGGGAACCACTAATTCTTTAGTGGCTGCCGTGCGTTCTGGCTCTGTTGATGCCTTAAAAGATGAATCCGGAAAACGATTATTGCCTTCAGTCGCTCGTTACCTGCCTGATGGCGAGGTTGTCGTTGGAGAAGCTGCAAAAGCCTATGCTGCCCGCGATCCCAAAAATACGATCGTTTCTGTTAAGCGGTTTATGGGACGTGCCTTCGAAGATATTGAAGCTCATCCTATTTATGATCTCGTGGATGGCGAGGGTATGGTGCGGCTGAGTACTTGTGCCGGTGAAAAAAGCCCTGTGCAGGTGTCAGCGGATATTTTAGAGGCACTAAAAGACAGAGCAGAACAGACTTTTTCTGCTAGCCTTGACGGTGCCGTTATCACAGTGCCAGCCTATTTTGATGATGCCCAACGACAGGCCACAAAAGATGCGGCCGCTTTAGCTGGATTAAAAGTCTTACGCTTAATCAATGAACCGACCGCCGCTGCCGTTGCGTATGGGCTGGATTCTGGACAAGAAGGGGTTGTTGCCGTTTATGATCTGGGCGGTGGAACTTTTGATGTGTCTATTTTGCGTTTAAGCATGGGTGTCTTCGAAGTGCTTGCCACAGGCGGAAACAGCCGTCTGGGGGGAGATGATTTTGACCAAGCCATTTGTCAGTGGATGCTTGATCGTCTATCGATAGAAGCCTCACATCTGAGCGCAGAAAATTATCGCTATTTTCTAGACAAGGCTTGTCAGGTCAAAGAAGCGCTGACCGCAGAATCTGAAGTCGAAGTTACCTTATCCTATGACGGCCAGGAAACTGCTTTACGAGTAGATCGAGAAACCGTGAATGGGCTCATTGCGTCACTGATCGACACGACTTTAAGGGCATGTCGGCGGTGTTTACGGGATGCGCAAGTCCAGGTCGACGATGTGCTTTCAGTCGTCATGGTGGGCGGTTCTACTCGTGTGCCTGAAGTTAGGCATCGCGTTGGTGAATTTTTTCGACAACCGCCAATGGTTGATATTGATCCTGATGAAGTGGTTGCTGTTGGCGCAGCCCGTCAGGCGGATATGCTAGTGGGAAATGCAAAAGACGGTGAGCTTTTACTGTTGGATGTTAATCCTCTATCACTGGGTATTGAAACAATGGGTGGGATCGTCGAGGTTATTATTCCAAGGAATAGTACGATTCCCATTGCCCGAGGCCAGGAGTTTACGACCTATAAAGATGGTCAGTCTGCATTAGCGGTTCATGTACTCCAAGGAGAACGTGACTCGGCAGAACATTGCCGCTCACTTGCGCGTTTTGAACTCAGAGGTATTCCTCCGATGCCGGCTGGTGCAGCAAAAATACGTGTTTCCTTTCAAGTTGATGCTGATGGTTTGCTCAGTGTCACCGCTAAAGAACTCAACAGTGGCGTTGAAAGCCAAGTCCAAGTCAAACCTTCCTACGGTTTAGCCGATGAAGAGATTACTCGTATGATTACTGAGTCCTTTGAAAATGCTGAAGAGGATGCTGCTAATCGCGTGTTGAAAGAAGCCCGTGTGGAGCTTGATCGTATTGTGCTTGCCTTGGAAACTGCACTTGAAGCCGATGGAGAAGCTTTACTATCCGCAACTGAGCAAGGACAATTGCAGCAGTTATTGGCAGAGCTTCGAAATATTCGCCCTAGTGAAAAGGTAGAAGAAATTAATCATATGATTGCGAAAGCGGGAAAAGACACCGAGGAGTTCGCCGCGAGGCATCTTTGTCCAGAGGGTGCTGTTGTAGAAGCCGAACCCGGCGAAACCATTATTGATGTCGCTTTAAAAAGTGGCATTGATATTGAGCATGCCTGTGAAAAATCTTGTGCCTGTACGACGTGTCACGTTGTTGTACGCGAAGGTTTTGATTCCCTCAATGAAGCAGATGATCTAGAAGAAGATATGCTGGACAAAGCTTGGGGTCTAGAGGCTGAATCTCGGTTGAGTTGCCAGGCTGAGGTTGGCCAAGAAGATTTAGTCGTCGAAATTCCAAAATACACGATCAATCAAGTTTCAGAGAATCACTAA

Transcript

ANN35082-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0KCG7	Chaperone protein HscA homolog OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=hscA PE=3 SV=1
Q1LPL1	Chaperone protein HscA homolog OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=hscA PE=3 SV=1
Q473J2	Chaperone protein HscA homolog OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=hscA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000441 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00111 all species →	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF00012 all species →	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029047 all species →	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR043129 all species →	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR010236 all species →	Family	ISC system FeS cluster assembly, HscA chaperone	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR029048 all species →	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR018181 all species →	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR011536 all species →	Family	Ferredoxin 2Fe-2S type, proteobacteria	Interproscan
IPR013126 all species →	Family	Heat shock protein 70 family	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR042039 all species →	Domain	HscA chaperone, nucleotide-binding domain	Interproscan
IPR018298 all species →	Binding_site	Adrenodoxin, iron-sulphur binding site	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19375 all species →	HEAT SHOCK PROTEIN 70KDA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016226 all species →	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0140647 all species →	Biological Process	P450-containing electron transport chain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04043	dnaK, HSPA9; molecular chaperone DnaK	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.