Gene detail

Detailed information of ANN35082-RA in Leptoseris scabra

Genomic Location: Scaffold_862__1_contigs__length_32107:25872...28081
NR annotation: KAF1852798.1, hypothetical protein Lal_00008960 [Lupinus albus]

Gene Structure

More details in Jbrowse

Sequence

CDS

ANN35082-RA

ATGGCGTTATTGCAAATATCCGAGCCTGGAGCTAGCCCGGCTCCTCATCAGAGGAAAATTGCGGTTGGTATTGATTTGGGAACCACTAATTCTTTAGTGGCTGCCGTGCGTTCTGGCTCTGTTGATGCCTTAAAAGATGAATCCGGAAAACGATTATTGCCTTCAGTCGCTCGTTACCTGCCTGATGGCGAGGTTGTCGTTGGAGAAGCTGCAAAAGCCTATGCTGCCCGCGATCCCAAAAATACGATCGTTTCTGTTAAGCGGTTTATGGGACGTGCCTTCGAAGATATTGAAGCTCATCCTATTTATGATCTCGTGGATGGCGAGGGTATGGTGCGGCTGAGTACTTGTGCCGGTGAAAAAAGCCCTGTGCAGGTGTCAGCGGATATTTTAGAGGCACTAAAAGACAGAGCAGAACAGACTTTTTCTGCTAGCCTTGACGGTGCCGTTATCACAGTGCCAGCCTATTTTGATGATGCCCAACGACAGGCCACAAAAGATGCGGCCGCTTTAGCTGGATTAAAAGTCTTACGCTTAATCAATGAACCGACCGCCGCTGCCGTTGCGTATGGGCTGGATTCTGGACAAGAAGGGGTTGTTGCCGTTTATGATCTGGGCGGTGGAACTTTTGATGTGTCTATTTTGCGTTTAAGCATGGGTGTCTTCGAAGTGCTTGCCACAGGCGGAAACAGCCGTCTGGGGGGAGATGATTTTGACCAAGCCATTTGTCAGTGGATGCTTGATCGTCTATCGATAGAAGCCTCACATCTGAGCGCAGAAAATTATCGCTATTTTCTAGACAAGGCTTGTCAGGTCAAAGAAGCGCTGACCGCAGAATCTGAAGTCGAAGTTACCTTATCCTATGACGGCCAGGAAACTGCTTTACGAGTAGATCGAGAAACCGTGAATGGGCTCATTGCGTCACTGATCGACACGACTTTAAGGGCATGTCGGCGGTGTTTACGGGATGCGCAAGTCCAGGTCGACGATGTGCTTTCAGTCGTCATGGTGGGCGGTTCTACTCGTGTGCCTGAAGTTAGGCATCGCGTTGGTGAATTTTTTCGACAACCGCCAATGGTTGATATTGATCCTGATGAAGTGGTTGCTGTTGGCGCAGCCCGTCAGGCGGATATGCTAGTGGGAAATGCAAAAGACGGTGAGCTTTTACTGTTGGATGTTAATCCTCTATCACTGGGTATTGAAACAATGGGTGGGATCGTCGAGGTTATTATTCCAAGGAATAGTACGATTCCCATTGCCCGAGGCCAGGAGTTTACGACCTATAAAGATGGTCAGTCTGCATTAGCGGTTCATGTACTCCAAGGAGAACGTGACTCGGCAGAACATTGCCGCTCACTTGCGCGTTTTGAACTCAGAGGTATTCCTCCGATGCCGGCTGGTGCAGCAAAAATACGTGTTTCCTTTCAAGTTGATGCTGATGGTTTGCTCAGTGTCACCGCTAAAGAACTCAACAGTGGCGTTGAAAGCCAAGTCCAAGTCAAACCTTCCTACGGTTTAGCCGATGAAGAGATTACTCGTATGATTACTGAGTCCTTTGAAAATGCTGAAGAGGATGCTGCTAATCGCGTGTTGAAAGAAGCCCGTGTGGAGCTTGATCGTATTGTGCTTGCCTTGGAAACTGCACTTGAAGCCGATGGAGAAGCTTTACTATCCGCAACTGAGCAAGGACAATTGCAGCAGTTATTGGCAGAGCTTCGAAATATTCGCCCTAGTGAAAAGGTAGAAGAAATTAATCATATGATTGCGAAAGCGGGAAAAGACACCGAGGAGTTCGCCGCGAGGCATCTTTGTCCAGAGGGTGCTGTTGTAGAAGCCGAACCCGGCGAAACCATTATTGATGTCGCTTTAAAAAGTGGCATTGATATTGAGCATGCCTGTGAAAAATCTTGTGCCTGTACGACGTGTCACGTTGTTGTACGCGAAGGTTTTGATTCCCTCAATGAAGCAGATGATCTAGAAGAAGATATGCTGGACAAAGCTTGGGGTCTAGAGGCTGAATCTCGGTTGAGTTGCCAGGCTGAGGTTGGCCAAGAAGATTTAGTCGTCGAAATTCCAAAATACACGATCAATCAAGTTTCAGAGAATCACTAA

Transcript

ANN35082-RA

Protein

Uniprot

Uniprot term	Description
Q0KCG7	Chaperone protein HscA homolog OS=Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337) OX=381666 GN=hscA PE=3 SV=1
Q1LPL1	Chaperone protein HscA homolog OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) OX=266264 GN=hscA PE=3 SV=1
Q473J2	Chaperone protein HscA homolog OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) OX=264198 GN=hscA PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00111	Fer2	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF00012	HSP70	Hsp70 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029047	Homologous_superfamily	Heat shock protein 70kD, peptide-binding domain superfamily	Interproscan
IPR043129	Homologous_superfamily	ATPase, nucleotide binding domain	Interproscan
IPR010236	Family	ISC system FeS cluster assembly, HscA chaperone	Interproscan
IPR001041	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR029048	Homologous_superfamily	Heat shock protein 70kD, C-terminal domain superfamily	Interproscan
IPR018181	Conserved_site	Heat shock protein 70, conserved site	Interproscan
IPR011536	Family	Ferredoxin 2Fe-2S type, proteobacteria	Interproscan
IPR013126	Family	Heat shock protein 70 family	Interproscan
IPR012675	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR042039	Domain	HscA chaperone, nucleotide-binding domain	Interproscan
IPR018298	Binding_site	Adrenodoxin, iron-sulphur binding site	Interproscan
IPR036010	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19375	HEAT SHOCK PROTEIN 70KDA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006457	Biological Process	protein folding	Interproscan
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0051082	Molecular Function	unfolded protein binding	Interproscan
GO:0051536	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0009055	Molecular Function	electron transfer activity	Interproscan
GO:0051537	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0140662	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0140647	Biological Process	P450-containing electron transport chain	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04043	dnaK, HSPA9; molecular chaperone DnaK	-	Exosome	ko04147	deepkoala