Genomic Location: Scaffold_76__1_contigs__length_70814:5216...6364
NR annotation: MCG8671572.1, chromosomal replication initiator protein DnaA [Pseudomonadales bacterium]
Species Leptoseris scabra · all data for this species · gene families
| CDS |
| ANN35089-RA |
| Transcript |
| ANN35089-RA |
| Protein |
| ANN35089-RA |
| UniProt accession | Description |
|---|---|
| Q1R1P2 | Chromosomal replication initiator protein DnaA OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=dnaA PE=3 SV=1 |
| C1DFU2 | Chromosomal replication initiator protein DnaA OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) OX=322710 GN=dnaA PE=3 SV=1 |
| B1J3Y2 | Chromosomal replication initiator protein DnaA OS=Pseudomonas putida (strain W619) OX=390235 GN=dnaA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0012707 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00308 all species → | Bac_DnaA | Bacterial dnaA protein | Domain | Interproscan |
| PF08299 all species → | Bac_DnaA_C | Bacterial dnaA protein helix-turn-helix | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001957 all species → | Family | Chromosomal replication control, initiator DnaA | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR010921 all species → | Homologous_superfamily | Trp repressor/replication initiator | Interproscan |
| IPR013317 all species → | Domain | Chromosomal replication initiator protein DnaA | Interproscan |
| IPR013159 all species → | Domain | Chromosomal replication initiator, DnaA C-terminal | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR020591 all species → | Family | Chromosomal replication control, initiator DnaA-like | Interproscan |
| IPR018312 all species → | Conserved_site | Chromosomal replication control, initiator DnaA, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR30050 all species → | CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003688 all species → | Molecular Function | DNA replication origin binding | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0006270 all species → | Biological Process | DNA replication initiation | Interproscan |
| GO:0006275 all species → | Biological Process | regulation of DNA replication | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0043565 all species → | Molecular Function | sequence-specific DNA binding | Interproscan |
| GO:0005886 all species → | Cellular Component | plasma membrane | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02313 | dnaA; chromosomal replication initiator protein | - | Chromosome and associated proteins | ko03036 | deepkoala |
Genes whose expression across the transcriptome samples of Leptoseris scabra tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptoseris scabra, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
