Detailed information of ANN35092-RA in Leptoseris scabra

Genomic Location: Scaffold_76__1_contigs__length_70814:33662...34603
NR annotation: WP_072327186.1, methionyl-tRNA formyltransferase [Marinospirillum alkaliphilum]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A1TWN0Methionyl-tRNA formyltransferase OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=fmt PE=3 SV=1
A0KEW9Methionyl-tRNA formyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=fmt PE=3 SV=1
Q3YWX2Methionyl-tRNA formyltransferase OS=Shigella sonnei (strain Ss046) OX=300269 GN=fmt PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003249 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00551
all species →		Formyl_trans_NFormyl transferaseDomainInterproscan
PF02911
all species →		Formyl_trans_CFormyl transferase, C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011034
all species →		Homologous_superfamilyFormyl transferase-like, C-terminal domain superfamilyInterproscan
IPR041711
all species →		DomainMethionyl-tRNA formyltransferase, N-terminal domainInterproscan
IPR002376
all species →		DomainFormyl transferase, N-terminalInterproscan
IPR005794
all species →		FamilyMethionyl-tRNA formyltransferaseInterproscan
IPR036477
all species →		Homologous_superfamilyFormyl transferase, N-terminal domain superfamilyInterproscan
IPR005793
all species →		DomainFormyl transferase, C-terminalInterproscan
IPR044135
all species →		DomainMethionyl-tRNA formyltransferase, C-terminal domainInterproscan
IPR037022
all species →		Homologous_superfamilyFormyl transferase, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11138
all species →		METHIONYL-TRNA FORMYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0004479
all species →		Molecular Functionmethionyl-tRNA formyltransferase activityInterproscan
GO:0009058
all species →		Biological Processbiosynthetic processInterproscan
GO:0071951
all species →		Biological Processconversion of methionyl-tRNA to N-formyl-methionyl-tRNAInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00604MTFMT, fmt; methionyl-tRNA formyltransferaseEC:2.1.2.9
Aminoacyl-tRNA biosynthesisko00970deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP