Gene detail

Detailed information of ANN35100-RA in Leptoseris scabra

Genomic Location: Scaffold_136__1_contigs__length_51291:39725...41029
NR annotation: WP_020583663.1, ATP-dependent Clp protease ATP-binding subunit ClpX [Endozoicomonas elysicola]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A1U1Q2	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=clpX PE=3 SV=1
Q2SK35	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=clpX PE=3 SV=1
Q0VQ89	ATP-dependent Clp protease ATP-binding subunit ClpX OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2) OX=393595 GN=clpX PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07724 all species →	AAA_2	AAA domain (Cdc48 subfamily)	Domain	Interproscan
PF06689 all species →	zf-C4_ClpX	ClpX C4-type zinc finger	Domain	Interproscan
PF10431 all species →	ClpB_D2-small	C-terminal, D2-small domain, of ClpB protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR010603 all species →	Domain	Zinc finger, ClpX C4-type	Interproscan
IPR046425 all species →	Family	Clp protease, ATP-binding subunit ClpX, bacteria	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR038366 all species →	Homologous_superfamily	Zinc finger, ClpX C4-type superfamily	Interproscan
IPR004487 all species →	Family	Clp protease, ATP-binding subunit ClpX	Interproscan
IPR050052 all species →	Family	ATP-dependent Clp protease ATP-binding subunit ClpX	Interproscan
IPR019489 all species →	Domain	Clp ATPase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48102 all species →	ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan
GO:0009376 all species →	Cellular Component	HslUV protease complex	Interproscan
GO:0051301 all species →	Biological Process	cell division	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03544	clpX, CLPX; ATP-dependent Clp protease ATP-binding subunit ClpX	-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.