Gene detail

Detailed information of ANN35126-RA in Leptoseris scabra

Genomic Location: Scaffold_50__1_contigs__length_89434:7553...8956
NR annotation: MCC5857439.1, adenylosuccinate lyase [Ectothiorhodospiraceae bacterium]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9I0K9	Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=purB PE=1 SV=1
P0AB90	Adenylosuccinate lyase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) OX=199310 GN=purB PE=3 SV=1
P0AB89	Adenylosuccinate lyase OS=Escherichia coli (strain K12) OX=83333 GN=purB PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015936 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan
PF08328 all species →	ASL_C	Adenylosuccinate lyase C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR000362 all species →	Family	Fumarate lyase family	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR047136 all species →	Family	Adenylosuccinate lyase PurB, bacteria	Interproscan
IPR013539 all species →	Domain	Adenylosuccinate lyase PurB, C-terminal	Interproscan
IPR004769 all species →	Family	Adenylosuccinate lyase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43411 all species →	ADENYLOSUCCINATE LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0004018 all species →	Molecular Function	N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity	Interproscan
GO:0006188 all species →	Biological Process	IMP biosynthetic process	Interproscan
GO:0009152 all species →	Biological Process	purine ribonucleotide biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01756	purB, ADSL; adenylosuccinate lyase	EC:4.3.2.2	Alanine, aspartate and glutamate metabolism	ko00250	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.