Detailed information of ANN35127-RA in Leptoseris scabra

Genomic Location: Scaffold_50__1_contigs__length_89434:9728...11356
NR annotation: CZX90717.1, tRNA-specific 2-thiouridylase mnmA [Enterobacter ludwigii]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1IBE4tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas entomophila (strain L48) OX=384676 GN=mnmA PE=3 SV=1
Q4ZRK0tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas syringae pv. syringae (strain B728a) OX=205918 GN=mnmA PE=3 SV=1
Q3KA70tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas fluorescens (strain Pf0-1) OX=205922 GN=mnmA PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0015317 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20259
all species →		tRNA_Me_trans_MtRNA methyl transferase PRC-barrel domainDomainInterproscan
PF20258
all species →		tRNA_Me_trans_CAminomethyltransferase beta-barrel domainDomainInterproscan
PF00293
all species →		NUDIXNUDIX domainDomainInterproscan
PF03054
all species →		tRNA_Me_transtRNA methyl transferase HUP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR033713
all species →		FamilyPhosphatase NudJInterproscan
IPR046884
all species →		DomaintRNA-specific 2-thiouridylase MnmA-like, central domainInterproscan
IPR023382
all species →		Homologous_superfamilytRNA-specific 2-thiouridylase MnmA-like, central domain superfamilyInterproscan
IPR004506
all species →		FamilytRNA-specific 2-thiouridylaseInterproscan
IPR020084
all species →		Conserved_siteNUDIX hydrolase, conserved siteInterproscan
IPR046885
all species →		DomaintRNA-specific 2-thiouridylase MnmA-like, C-terminal domainInterproscan
IPR000086
all species →		DomainNUDIX hydrolase domainInterproscan
IPR014729
all species →		Homologous_superfamilyRossmann-like alpha/beta/alpha sandwich foldInterproscan
IPR015797
all species →		Homologous_superfamilyNUDIX hydrolase-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11933
all species →		TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0004787
all species →		Molecular Functionthiamine diphosphate phosphatase activityInterproscan
GO:0017110
all species →		Molecular Functionnucleoside diphosphate phosphatase activityInterproscan
GO:0017111
all species →		Molecular Functionribonucleoside triphosphate phosphatase activityInterproscan
GO:0002143
all species →		Biological ProcesstRNA wobble position uridine thiolationInterproscan
GO:0016783
all species →		Molecular Functionsulfurtransferase activityInterproscan
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0016740
all species →		Molecular Functiontransferase activityInterproscan
GO:0016787
all species →		Molecular Functionhydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ANN35127-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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