Gene detail

Detailed information of ANN35130-RA in Leptoseris scabra

Genomic Location: Scaffold_50__1_contigs__length_89434:23892...25058
NR annotation: WP_096346578.1, replication-associated recombination protein A [Halopseudomonas laoshanensis]
Species abbreviation LSCAB · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P39918	Replication-associated recombination protein A OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) OX=227377 GN=rarA PE=3 SV=3
P45262	Replication-associated recombination protein A OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=rarA PE=3 SV=1
P0AAZ6	Replication-associated recombination protein A OS=Escherichia coli O157:H7 OX=83334 GN=rarA PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005280 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16193 all species →	AAA_assoc_2	AAA C-terminal domain	Family	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF12002 all species →	MgsA_C	MgsA AAA+ ATPase C terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032423 all species →	Domain	AAA C-terminal domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR051314 all species →	Family	AAA ATPase RarA/MGS1/WRNIP1	Interproscan
IPR008921 all species →	Homologous_superfamily	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR021886 all species →	Domain	MgsA AAA+ ATPase C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13779 all species →	WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000731 all species →	Biological Process	DNA synthesis involved in DNA repair	Interproscan
GO:0006261 all species →	Biological Process	DNA-templated DNA replication	Interproscan
GO:0008047 all species →	Molecular Function	enzyme activator activity	Interproscan
GO:0017116 all species →	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07478	ycaJ; putative ATPase	-	Replication and repair	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.