Detailed information of ANN35154-RA in Leptoseris scabra

Genomic Location: Scaffold_135__1_contigs__length_51350:33991...34698
NR annotation: TVP89504.1, tRNA (guanosine(37)-N1)-methyltransferase TrmD [Pseudomonadaceae bacterium]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
C4LD25tRNA (guanine-N(1)-)-methyltransferase OS=Tolumonas auensis (strain DSM 9187 / NBRC 110442 / TA 4) OX=595494 GN=trmD PE=3 SV=1
A0KG25tRNA (guanine-N(1)-)-methyltransferase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049) OX=380703 GN=trmD PE=3 SV=1
A6W1U0tRNA (guanine-N(1)-)-methyltransferase OS=Marinomonas sp. (strain MWYL1) OX=400668 GN=trmD PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0013301 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01746
all species →		tRNA_m1G_MTtRNA (Guanine-1)-methyltransferaseFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002649
all species →		FamilytRNA (guanine-N1-)-methyltransferase TrmDInterproscan
IPR016009
all species →		DomaintRNA methyltransferase TRMD/TRM10-type domainInterproscan
IPR029026
all species →		Homologous_superfamilytRNA (guanine-N1-)-methyltransferase, N-terminalInterproscan
IPR029028
all species →		Homologous_superfamilyAlpha/beta knot methyltransferasesInterproscan
IPR023148
all species →		Homologous_superfamilytRNA (guanine-N(1)-)-methyltransferase, C-terminal domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46417
all species →		TRNA (GUANINE-N(1)-)-METHYLTRANSFERASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008033
all species →		Biological ProcesstRNA processingInterproscan
GO:0052906
all species →		Molecular FunctiontRNA (guanine(37)-N1)-methyltransferase activityInterproscan
GO:0002939
all species →		Biological ProcesstRNA N1-guanine methylationInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K00554trmD; tRNA (guanine37-N1)-methyltransferaseEC:2.1.1.228
Transfer RNA biogenesisko03016deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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