Detailed information of ANN35161-RA in Leptoseris scabra

Genomic Location: Scaffold_108__1_contigs__length_57352:4960...7164
NR annotation: NOY72512.1, ammonium transporter [Gammaproteobacteria bacterium]
Species Leptoseris scabra · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P54147Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0108 PE=3 SV=1
P54148Putative ammonium transporter sll0537 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa) OX=1111708 GN=sll0537 PE=3 SV=1
O28528Ammonium transporter Amt2 OS=Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16) OX=224325 GN=amt2 PE=3 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0013011 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00909
all species →		Ammonium_transpAmmonium Transporter FamilyFamilyInterproscan
PF00015
all species →		MCPsignalMethyl-accepting chemotaxis protein (MCP) signalling domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR018047
all species →		Conserved_siteAmmonium transporter, conserved siteInterproscan
IPR004090
all species →		FamilyChemotaxis methyl-accepting receptorInterproscan
IPR024041
all species →		DomainAmmonium transporter AmtB-like domainInterproscan
IPR004089
all species →		DomainMethyl-accepting chemotaxis protein (MCP) signalling domainInterproscan
IPR001905
all species →		FamilyAmmonium transporterInterproscan
IPR029020
all species →		Homologous_superfamilyAmmonium/urea transporterInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11730
all species →		AMMONIUM TRANSPORTERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008519
all species →		Molecular Functionammonium channel activityInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0072488
all species →		Biological Processammonium transmembrane transportInterproscan
GO:0004888
all species →		Molecular Functiontransmembrane signaling receptor activityInterproscan
GO:0006935
all species →		Biological ProcesschemotaxisInterproscan
GO:0007165
all species →		Biological Processsignal transductionInterproscan
GO:0097272
all species →		Biological Processammonium homeostasisInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K03320amt, AMT, MEP; ammonium transporter, Amt family-Transportersko02000deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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