Gene detail

Detailed information of ANN35178-RA in Leptoseris scabra

Genomic Location: Scaffold_186__1_contigs__length_46377:1892...3151
NR annotation: WP_087459667.1, transcription termination factor Rho [Oleiphilus messinensis]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9HTV1	Transcription termination factor Rho OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rho PE=3 SV=1
P52155	Transcription termination factor Rho OS=Pseudomonas fluorescens biotype C OX=335 GN=rho PE=3 SV=1
P0AG32	Transcription termination factor Rho OS=Escherichia coli O157:H7 OX=83334 GN=rho PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012453 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00006 all species →	ATP-synt_ab	ATP synthase alpha/beta family, nucleotide-binding domain	Domain	Interproscan
PF07498 all species →	Rho_N	Rho termination factor, N-terminal domain	Domain	Interproscan
PF07497 all species →	Rho_RNA_bind	Rho termination factor, RNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011113 all species →	Domain	Rho termination factor, RNA-binding domain	Interproscan
IPR011112 all species →	Domain	Rho termination factor, N-terminal	Interproscan
IPR000194 all species →	Domain	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR004665 all species →	Family	Transcription termination factor Rho	Interproscan
IPR041703 all species →	Domain	Transcription termination factor Rho, ATP binding domain	Interproscan
IPR011129 all species →	Domain	Cold shock domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR036269 all species →	Homologous_superfamily	Rho termination factor, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46425 all species →	TRANSCRIPTION TERMINATION FACTOR RHO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0006353 all species →	Biological Process	DNA-templated transcription termination	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008186 all species →	Molecular Function	ATP-dependent activity, acting on RNA	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03628	rho; transcription termination factor Rho	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.