Gene detail

Detailed information of ANN35179-RA in Leptoseris scabra

Genomic Location: Scaffold_186__1_contigs__length_46377:8148...10740
NR annotation: KAG1707588.1, Porphobilinogen deaminase [Nymphon striatum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ANN35179-RA

ATGAAAGTATTGGTTGTAGATGACGAGCAATTGGCCCGAGATCGCCTCAGCCGACTGTTAGAAAATGAAATGGATTATCAGGTTGTCGGCTCATTGAGCAATGGCGTTGATGCCGTTGAAGCCGTGAAAAGCCTACACCCTGATGTGGTGTTGATGGATATTCGCATGCCAGCGATGGATGGTTTAGAAGCCGCTACCCATATATCCAACTTAGAACAGCCGCCGGCGATTGTATTTTGCACCGCTTATGATGATTACGCGATTGACGCCTTTGAGGTCAATGCCGTGGGTTATCTATTAAAGCCTGTGCGTCAGCAAGCCTTGTTGGATGTGTTATCCAAAGCCGGCAAGATCAATCGTGTTCAGCTGTCAGCGATACAGGATGTCATGGGTCAAGATAATGTGGCCAATGAAGATGTTCGTAGCCATATTAGTGCCCGAACCCGTCGAGGTATGGAGCTGATTCCCATCGAATCTGTCTGCTATTTTTTGGCAGATCACAAATATGTCACGGTGCGCCACACAGAAGGCGAAGTGCTCATTGATGACACCTTGAAAGATTTAGAAAAGGAATTTTCCAACACATTTATTCGTATTCATCGCAACTGTTTGGTCTCTCGCCATTATTTAGAAGCGATGGAGAGAACAGACAGTGGTCAATATCTTGTGTGTTTACGAGCCATTGATGATCAGTTGCAATTAACTAGGACTCCCATGAGCACATCCGTTCTTCGTATCGCTACGCGTAAAAGTCCCCTCGCACTGTGGCAGGCAGAGCATATCAAGTCTCGTTTGGAAGCCTTGCACACAGGCCTGACGGTTGAATTACTTCCTATGACCACGAAAGGGGATAAAATTCTTGATTCGCCGTTAGCGAAAGTGGGTGGCAAAGGACTTTTTGTGAAAGAGCTTGAAGTGGCAATGTTAGAGGGACGCGCTGATATTGCTGTGCATTCCATGAAAGATGTGCCTATGGAGTTTCCTGACGGCTTGGAGCTGGCGACCATTTGTGAGCGGGAAGTGCCGCTGGATGCCTTTGTTTCCAACCGCTACCAGCAATTCTCTGATTTGCCTCAGGGTGCTAAGGTCGGCACCTCCAGTCTTCGTCGTCAATGTCAGCTGAAGGCGTTGCGACCTGATATCGAGTTTTTGGATTGTCGGGGTAATGTTGGGACTCGCCTGAGTAAACTGGATGCTAACGAGTATGACGCGATTATCCTAGCCAGTGCGGGTTTGTTGCGTCTGGGGTTCCCTGAGCGAATTGCCGATCGAATATCGACCGAGATGAGTTTGCCCGCCGGTGGCCAAGGTGCCATTGGTATCGAATGTCGCGCTAACGATGCCGAGATTAAATCCCTTTTAGCGCCTCTGCACCATGAGGCTACGGCTGTTTGTGTGCGCGCCGAACGAGCCCTCAACCAGCGTTTGCAAGGGGGGTGTCAGGTGCCAATTGCGGCCTTTGCAGAAACCCTGGATGAAGAAAATTTGCAGCTCAGAGGGTTGGTTGGCTCGCTAGATGGAGAGCGTTTGATTGAGGCTAGCGCAACAGGCGCGAACCAGGATGCGGAAGCCGTGGGTATTCAGGCGCACGGCTATCAGGGTGTGGCGTTTCCTCAAATCGCTATTCATGCCCTGGAAGAAACGCCTCATATACGCCAAGTGTTTTTGTCCATCGACAGTTACGACAAGGTGGTGGTGGTCAGTCGCAATGCGGCAGAGGCTTTGCTGCGCGGCCTGGATACGTTTTGGCCCCAGTTGCCATTGCATCCAGCATGGTATGCCGTAGGTTCTGCCACCGCGGAAGTTATGGCAACAGAAGGTTTAGAAGTCGAGCATCCTGAAGCAGGTTTTACTTCTGAAACCCTACTACAACTCCCCGGCTTTGTCGTTCCGGGCCAGCGGTATCTGCTGGTTAAAGGCGAAGGCGGACGACCTTATTTAGCCGAACAGTTACGCCAGTCGGGTTGCTCTGTTGATACCGTCGATTTATACCGACGCGTTACCTTGGATTATTCTCAACGGGAAATCGAAGCTGAGCTCGTGCTCAATGTACCGGCGCCTGTTGATGTGGTGTTGGTGAGCAGTGGCGAAATATTGCAGCAATTTTGCCGCAATATGGTGGTAGCCCAAGATCTCTTGCAGAGATTGACCTTTGTTTTGCCCAGTCAACGGGTCTTGGCTTTGGCTCGCACGCTAGGGATTGAACAATGGGTTTTAGCCGAGAGTGCTTCCGATACAGATATGCTTGCAGCATTGGCCAACCTCGCCGAGTAA

Transcript

ANN35179-RA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B0TJ54	Porphobilinogen deaminase OS=Shewanella halifaxensis (strain HAW-EB4) OX=458817 GN=hemC PE=3 SV=1
A8GZG4	Porphobilinogen deaminase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) OX=398579 GN=hemC PE=3 SV=1
Q088L3	Porphobilinogen deaminase OS=Shewanella frigidimarina (strain NCIMB 400) OX=318167 GN=hemC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004112 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04397 all species →	LytTR	LytTr DNA-binding domain	Domain	Interproscan
PF03900 all species →	Porphobil_deamC	Porphobilinogen deaminase, C-terminal domain	Domain	Interproscan
PF00072 all species →	Response_reg	Response regulator receiver domain	Domain	Interproscan
PF01379 all species →	Porphobil_deam	Porphobilinogen deaminase, dipyromethane cofactor binding domain	Domain	Interproscan
PF02602 all species →	HEM4	Uroporphyrinogen-III synthase HemD	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007492 all species →	Domain	LytTR DNA-binding domain	Interproscan
IPR022418 all species →	Domain	Porphobilinogen deaminase, C-terminal	Interproscan
IPR000860 all species →	Family	Porphobilinogen deaminase	Interproscan
IPR036108 all species →	Homologous_superfamily	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily	Interproscan
IPR001789 all species →	Domain	Signal transduction response regulator, receiver domain	Interproscan
IPR022417 all species →	Domain	Porphobilinogen deaminase, N-terminal	Interproscan
IPR022419 all species →	Binding_site	Porphobilinogen deaminase, dipyrromethane cofactor binding site	Interproscan
IPR036803 all species →	Homologous_superfamily	Porphobilinogen deaminase, C-terminal domain superfamily	Interproscan
IPR011006 all species →	Homologous_superfamily	CheY-like superfamily	Interproscan
IPR003754 all species →	Domain	Tetrapyrrole biosynthesis, uroporphyrinogen III synthase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11557 all species →	PORPHOBILINOGEN DEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004418 all species →	Molecular Function	hydroxymethylbilane synthase activity	Interproscan
GO:0033014 all species →	Biological Process	tetrapyrrole biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006783 all species →	Biological Process	heme biosynthetic process	Interproscan
GO:0004852 all species →	Molecular Function	uroporphyrinogen-III synthase activity	Interproscan
GO:0000160 all species →	Biological Process	phosphorelay signal transduction system	Interproscan
GO:0018160 all species →	Biological Process	peptidyl-pyrromethane cofactor linkage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ANN35179-RA.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.