Gene detail

Detailed information of ANN35180-RA in Leptoseris scabra

Genomic Location: Scaffold_186__1_contigs__length_46377:12315...13715
NR annotation: WP_028303609.1, argininosuccinate lyase [Oceanospirillum maris]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1QSV4	Argininosuccinate lyase OS=Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11) OX=290398 GN=argH PE=3 SV=1
Q2SQ67	Argininosuccinate lyase OS=Hahella chejuensis (strain KCTC 2396) OX=349521 GN=argH PE=3 SV=1
Q48QD3	Argininosuccinate lyase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) OX=264730 GN=argH PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002688 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14698 all species →	ASL_C2	Argininosuccinate lyase C-terminal	Domain	Interproscan
PF00206 all species →	Lyase_1	Lyase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009049 all species →	Family	Argininosuccinate lyase	Interproscan
IPR000362 all species →	Family	Fumarate lyase family	Interproscan
IPR029419 all species →	Domain	Argininosuccinate lyase, C-terminal	Interproscan
IPR008948 all species →	Homologous_superfamily	L-Aspartase-like	Interproscan
IPR022761 all species →	Domain	Fumarate lyase, N-terminal	Interproscan
IPR020557 all species →	Conserved_site	Fumarate lyase, conserved site	Interproscan
IPR024083 all species →	Homologous_superfamily	Fumarase/histidase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43814 all species →	ARGININOSUCCINATE LYASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004056 all species →	Molecular Function	argininosuccinate lyase activity	Interproscan
GO:0042450 all species →	Biological Process	arginine biosynthetic process via ornithine	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01755	argH, ASL; argininosuccinate lyase	EC:4.3.2.1	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.