Gene detail

Detailed information of ANN35183-RA in Leptoseris scabra

Genomic Location: Scaffold_440__1_contigs__length_37958:455...1149
NR annotation: CAE7162333.1, rplE [Symbiodinium microadriaticum]
Species Leptoseris scabra · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
C5BQ71	Large ribosomal subunit protein uL14 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) OX=377629 GN=rplN PE=3 SV=1
A1TYK7	Large ribosomal subunit protein uL14 OS=Marinobacter nauticus (strain ATCC 700491 / DSM 11845 / VT8) OX=351348 GN=rplN PE=3 SV=1
Q21M48	Large ribosomal subunit protein uL14 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=rplN PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009397 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00366 all species →	Ribosomal_S17	Ribosomal protein S17	Domain	Interproscan
PF00238 all species →	Ribosomal_L14	Ribosomal protein L14p/L23e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019984 all species →	Family	Small ribosomal subunit protein uS17, bacteria/chloroplast	Interproscan
IPR005745 all species →	Family	Large ribosomal subunit protein uL14, bacterial-type	Interproscan
IPR000218 all species →	Family	Large ribosomal subunit protein uL14	Interproscan
IPR019972 all species →	Conserved_site	Large ribosomal subunit protein uL14, conserved site	Interproscan
IPR019979 all species →	Conserved_site	Small ribosomal subunit protein uS17, conserved site	Interproscan
IPR036853 all species →	Homologous_superfamily	Large ribosomal subunit protein uL14 superfamily	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR000266 all species →	Family	Small ribosomal subunit protein uS17	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11761 all species →	50S/60S RIBOSOMAL PROTEIN L14/L23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0015934 all species →	Cellular Component	large ribosomal subunit	Interproscan
GO:0022625 all species →	Cellular Component	cytosolic large ribosomal subunit	Interproscan
GO:0070180 all species →	Molecular Function	large ribosomal subunit rRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02874	RP-L14, MRPL14, rplN; large subunit ribosomal protein L14	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.